KEGG   Lysinibacillus pakistanensis: GDS87_20480
Entry
GDS87_20480       CDS       T06280                                 
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
lpak  Lysinibacillus pakistanensis
Brite
KEGG Orthology (KO) [BR:lpak00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lpak03016]
    GDS87_20480 (thpR)
Enzymes [BR:lpak01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     GDS87_20480 (thpR)
Transfer RNA biogenesis [BR:lpak03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    GDS87_20480 (thpR)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: QGG53134
Position
complement(4263411..4263974)
AA seq 187 aa
MNRHFFIAVPLPLSIKTALKEKCEMLKTNLHFKRWVHLEDYHITLAFLGNADLEQLQIVL
DEIKESLRKLPSFELKIRGLDIFGRKEYPRILWASIFESQPLNNVRDIVYKECVKAGFDL
DNKPFVPHITVARKWNETHGKMPIDLVMTEELGLPKFLVEEVVLYETKFEEIPKYHRKAV
IRLDDLF
NT seq 564 nt   +upstreamnt  +downstreamnt
atgaaccgacatttttttattgccgttccacttccgttatctattaaaactgctcttaaa
gaaaaatgtgaaatgctaaaaaccaatttgcattttaaacggtgggttcatctggaggat
tatcacattacactagcttttttagggaatgcagatctagagcaattacaaatagtttta
gatgaaataaaggaaagcctaaggaagcttccatcattcgagttaaaaattcgaggatta
gatatttttggtagaaaagaatatccaagaattttatgggctagtatttttgaatctcag
ccattaaataatgtgagagacattgtatacaaggaatgtgtaaaggcaggatttgattta
gataataaaccttttgttccacacataacagtagcaagaaaatggaatgaaactcacggt
aaaatgcctattgacttagtgatgactgaagagctggggcttccaaagtttttagtagaa
gaagtggtgctatatgaaacaaaatttgaggaaattccaaaatatcatcgaaaggctgtc
attcgtttagatgacctgttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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