KEGG   Limnochorda pilosa: LIP_2222
Entry
LIP_2222          CDS       T04150                                 
Name
(GenBank) DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
lpil  Limnochorda pilosa
Pathway
lpil03420  Nucleotide excision repair
lpil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lpil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LIP_2222
   03430 Mismatch repair
    LIP_2222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpil03400]
    LIP_2222
Enzymes [BR:lpil01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LIP_2222
DNA repair and recombination proteins [BR:lpil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LIP_2222
   MMR (mismatch excision repair)
    Other MMR factors
     LIP_2222
SSDB
Motif
Pfam: UvrD-helicase UvrD_C PDDEXK_1 AAA_19 UvrD_C_2 AAA_30 AAA_22 Viral_helicase1 Cas_Cas4
Other DBs
NCBI-ProteinID: BAS28063
UniProt: A0A0K2SLR8
Position
complement(2359174..2362143)
AA seq 989 aa
MKGSQLSPVQQEAIRHPARRLHVVASAGAGKTEVLARRSVWLMTEHGVPPESLIAFTFTE
KAAGELRQRIEERAAEADPGFAELPPVSRGMFVGTTHAWALEALKAMGAPYELVDVLDEA
AEWSLLQRVARRLGVLELFAAAEDRDEVQVAVSPAVERFLRSAEVVHNERIPIGLLAGQA
PEFAAVLQRYERLLLEMRVLPFRMLLGHAADALAPGGPLRRRLEGRVRHVLVDEAQDFNR
AQEEILRHLMDLGAAVTVVGDDDQAIYQWRGGDVRIFTDFDGRHPEVERIQLTTNYRSRP
EIVRTAAGVAGRLRERLPKELRTHREPLPPGSVEFFVAETPSDEAERMAGRIDRLLAEGH
RPAEVAVLLRSVRTAAGPFVNALRRRGIPVTVVGQTSLLSRPEMALVARIFVFWTTPGLE
PASWRPDPHSAPETVTPEELAGEVAGVTGMAPEQATALVTRLAGLGDQVRTRGVGDLIAL
YHQLLALLDLPRAGRAHEELGLGRMSTLLTSFEHSLRRAAPAWLYETVEAQEAEEDRLLQ
AEAGEGGDNGGEGGEDGREGKAVRLGLPPGEVFLARLRAFLEAFVGRAAEETPDTLPTAA
EAVQVMTVHQAKGLEFPVVFVPSLVERRFPSARMGERQVWYVPETLFDRARYEGREDDEA
RLFFVALSRARELLVLSTFTRYEKGGRTKPSRFLLYLAEALSAAQQLHSVHPAAVAVHGD
RQLLVLDFSSLLLYEGCAYRYWLSRVCGFQPVLARELGFGRLLHHAVAELGRRTLAGAAP
RAADVPSIVARSFYLPFAGSIPRARLQQAAVRRLTHYMERHGQELRRVLQPEMRFEVPLS
GARVRGRVDLLLRRDGEGAGREARREERDGERGERGGEPLQVELVDFKTSENRPPSEAHQ
NQLRLYGLACRRLGYDPVGLFIHDLDVDQGGRLRVEEDDGSRRAFEALLEEWVDGIRSAR
FTPNPGPTTCGSCDFRTFCAHSVMRGRVA
NT seq 2970 nt   +upstreamnt  +downstreamnt
gtgaagggttctcagctcagccctgttcagcaggaagccatccggcacccggctcggcgg
ctccacgtggtggcgtcggcgggggcagggaagaccgaggtcctggcccgccgctccgtc
tggctcatgaccgagcacggcgtgccgccggaaagcctcatcgcgttcaccttcaccgag
aaggccgccggcgagctgcggcagcgcatcgaggagcgcgcggccgaggccgatcccggc
ttcgccgagctcccgcccgtctcccggggtatgttcgttggaaccacccacgcgtgggcc
ctggaggcgctgaaggccatgggggcgccctacgagctggtggacgtgctggacgaggcc
gccgagtggagcctgctccaacgggtggcgcgccggctgggcgtgctcgagctcttcgcc
gcggcggaggatcgggacgaggtgcaggtggcggtgagcccggcggtggagcgcttcctc
cgcagcgccgaggtggtccacaacgagcggatccccatcggcctcctggcgggccaggcg
cccgagttcgcggccgtgctgcagcgctacgagcgcttgctgctcgagatgcgcgtcctg
cccttccgcatgctcctcgggcacgcggccgacgccctggctcccggcgggcccttgcgc
cggcgtctggagggcagggtgcggcacgtgctggtggacgaggcgcaggacttcaaccgg
gcccaggaggagatcctccgccacctcatggacctcggcgccgccgtgaccgtcgtcggc
gatgacgaccaggccatctaccagtggcggggcggcgacgtgcggatcttcaccgacttc
gacgggcgccacccggaggtcgagcgcatccaactgaccaccaactaccgctcccggccc
gagatcgtccgcaccgcggcgggcgtggcgggccgcctgcgcgagcgactccccaaggag
ctccggacgcaccgggagccgctaccgccggggtccgtggagttcttcgtggccgaaacg
ccctccgacgaggccgagcggatggccggccgcatcgaccgtctcctggccgagggtcac
cgtccggccgaggtggccgtcctcctgcgctcggtgcgcaccgcggccgggcccttcgtg
aacgccctgcgccgtcggggcatccccgtgacggtggtggggcagacctcgctcctttct
cggcccgagatggccctggtcgcccgcatcttcgtcttctggaccacgcccggcctggag
cccgcctcctggcgccccgatccccactccgccccggagacggtgacccccgaggagctg
gccggcgaggtcgccggggtgacggggatggcgccagagcaggcaaccgccctcgtcact
cgcctggccggcctgggggaccaggtccggacccgcggcgtgggcgacctcatcgccctt
taccaccagctgctcgccctcctcgacctcccccgggcgggccgggcccacgaagagttg
gggcttgggcgcatgtcgaccctgcttacctccttcgagcactcgctccgccgggccgcc
ccggcctggctctacgagaccgtcgaggcccaggaggcggaggaggaccggcttcttcag
gccgaggcgggggagggcggagacaacgggggagagggcggggaagacgggagggagggc
aaggccgtgcgcctcggcctgcctcctggcgaggtgtttctggctcgcctgagggccttc
ctggaggcgttcgtcggccgggcggccgaggagacccccgacacgctcccaaccgccgcc
gaggcggtgcaggtgatgaccgtccaccaggcgaagggcctcgagttccccgtcgtcttc
gtgccgtcgctggtggagcgccggttcccgtcggcccggatgggggagcggcaggtctgg
tacgtgcccgagaccctcttcgaccgggctcgttacgagggccgtgaggacgacgaggcc
cgactcttcttcgtggcactctcccgggcccgcgagctcctggtgctgagcacgttcacc
cggtacgagaagggcggcaggacgaagccctcccgattcctcctctacctggccgaggcc
ctctcggcggcgcagcagctccattccgtccatccggcggcggtggcggtgcacggcgat
cgccagctcttggtgctggacttctcgagcctcctcctctacgagggctgcgcgtaccgc
tactggctgagccgggtctgcggcttccagcctgtcctggcccgggagctgggcttcggg
cggctgctccaccacgcggtggccgagctgggacgccggaccctggcgggggcggccccg
cgggcggccgacgtgccctccatcgtggcgcggtccttctacctccccttcgcagggtcg
atccccagggcgcgcctccagcaggcggccgtccgtcgcctcacccactacatggaacgc
cacggccaggagctccgccgggtcctccagcccgagatgcgtttcgaggtcccgctgagc
ggcgcccgggtccgggggcgggtggacctcctgctgcggagggacggggagggtgcaggg
cgggaggcgaggcgtgaggaacgggacggggagcgtggggaacggggcggggagcccctg
caggtggaactggtcgacttcaagacctccgagaaccgcccgccctccgaagcccaccag
aaccagcttcgcctctacggcctcgcctgccgccggctgggctacgaccccgtcgggctc
ttcattcacgatctggacgtggaccagggcggtcggctgcgggtggaggaggacgacggc
agccggcgggctttcgaggctctgctggaggaatgggtagacgggatccgctcggcccgg
ttcacccccaatcccggaccgaccacgtgtggatcgtgcgacttccgcacgttctgcgcg
cactcggtgatgcggggaagggtggcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system