KEGG   Limnochorda pilosa: LIP_2930
Entry
LIP_2930          CDS       T04150                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
lpil  Limnochorda pilosa
Pathway
lpil03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lpil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LIP_2930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpil03400]
    LIP_2930
DNA repair and recombination proteins [BR:lpil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LIP_2930
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LIP_2930
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 AAA_21 AAA_29 nSTAND1 RsgA_GTPase AAA_22 AAA_23 nSTAND3 AAA_33 AAA_18 ATPase BCA_ABC_TP_C NACHT APS_kinase ATPase_2 AAA_25 cobW NTPase_1 Zn-ribbon_8 Viral_helicase1 DnaJ_CXXCXGXG DUF4350 Septin Dynamin_N
Other DBs
NCBI-ProteinID: BAS28759
UniProt: A0A0K2SPL2
Position
complement(3094837..3097806)
AA seq 989 aa
MSQEKIVIRGARQHNLKSIDLEIPRNRLVVLTGPSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDFIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARIGQP
HCPNCGIPIAQQTVEQIVDRLLQYPEGTRMQILAPLVRGRKGEYRKLLEDVRKEGFVRVR
VDGEVKSLDEPIDLEKQKKHTLEVVVDRIAVREGIASRVADSVQTALGRGEGIVVVEVQG
GEGAAEELLFSEKYACPQCGFSFGELAPRMFSFNSPYGACPSCDGLGVRMEVDPELLLDR
RRSVNSGGILPWANSHSRWLWGVLRAVCAKIGLDPDAPLSQATPEQIDVLLRGTHGEPVS
FTYRNQSGRSRVYETPYEGVVPWLDRKHREASSDWGRSEIEQYMSSRLCPECQGGRLRRE
SLAVRVGGRNLVEVTSLSVREALRFFEGLRLSEREELIARQVLKEIRARLGFLVNVGLDY
LTLDRTTGTLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNRKLLGTLKGLRDL
GNTVIVVEHDEETIREADHVVDIGPGAGKHGGEVVAAGTPGEVAANPRSITGQYLSGRLE
IPVPRIRRGGPARDGAGKGERPTLWVRGAREHNLKGVDVAFPLGLFICVTGVSGSGKSTL
VNEILYQQLARDLNGANVRAGRHDAIEGAEYLEKAIQIDQSPIGRTPRSNPATYTGAFTG
IRELFSRTPEARARGYLPGRFSFNVKGGRCEACQGDGIIKIEMHFLPDVYVPCEVCKGRR
YNRETLEVTYKGKTISDVLGMTVEEALDFFGIIPGIEPKLRTLNDVGLGYIELGQPATQL
SGGEAQRVKLATELARRSRGRTLYILDEPTTGLHTHDIRNLLDVLARLVDQGNTVVVIEH
NLDVIKTADYLIDLGPEGGEAGGQVIATGTPEEVALNARSYTGQFLRPILERAGTLPTAR
SSRNGRARGRQAADGPADRVAEGSGAVVP
NT seq 2970 nt   +upstreamnt  +downstreamnt
gtgagccaggagaagatcgtcattcgcggcgcccgccagcacaacctgaagtccatcgac
ctggagatccccaggaaccggctggtggtgctcaccgggccgtcaggctcggggaagtcc
tccctcgccttcgacaccatctacgcggaggggcagcgccggtacgtggagtcgctctcg
gcctacgcccgccagttcctgggccagatggacaagccggacgtggacttcatcgagggg
ctctcaccggccatttcgatcgaccagaagaccaccagccacaacccccgctccacggtg
ggcaccgtcaccgagatctacgactacctgcgactgctctacgcccgcatcgggcagccc
cactgcccgaactgcggcatccccatcgcccagcagacggtggagcagatcgtcgaccgg
ctcctccagtaccccgaggggacccggatgcagatcctggcgccgctggtgcggggccgg
aagggcgagtaccggaagctcctggaggacgtgcgcaaggagggcttcgtgcgggtccgg
gtggacggagaggtgaagagcctcgacgagcccatcgacctggagaagcagaagaaacac
accctcgaggtggtggtggaccggatcgccgtccgggaggggatcgcctcccgcgtggcc
gactcggtccagacggccctgggccgtggcgagggcatcgtggtggtggaggtgcagggc
ggcgagggggccgccgaggagctgcttttcagcgagaagtacgcctgtccccagtgcggc
ttcagcttcggggagctcgcgccccgcatgttctccttcaacagcccctatggcgcctgc
cccagctgcgacgggctgggcgtgcggatggaggtggaccccgagctcctcctggaccgc
cggcgctcggtgaacagtggggggatccttccctgggccaacagccacagccgctggctg
tggggcgtcctgcgggctgtctgcgcgaagatcggcctggaccccgacgcgcccctgagc
caggccacccccgagcagatcgacgtccttctccggggcacccacggggagcccgtcagc
ttcacgtaccggaaccagtcggggcggagccgggtctacgagacgccctacgagggcgtg
gtgccctggctggaccggaagcaccgggaggccagctccgactggggccggagcgagatc
gagcagtacatgtccagccgtctctgccccgagtgccagggcggccgcctccggcgggaa
agcctggccgtgcgggtcggcggccggaacctggtggaggttacctccctctcggtgcgc
gaggcgcttcgcttcttcgaggggctgcggctgagcgagcgggaggagctcatcgcccgc
caggtgctgaaggagatccgggcccgcctgggcttcctggtgaacgtggggctcgactac
ctcaccctggaccggaccacgggcaccctctcgggcggcgaggcccagcggatccgcctg
gccacccagatcggatcgcagctggtgggcgtcctctacatcctggacgaacccagcatc
ggcctccaccagcgggacaaccgcaagctcctgggaacgttgaagggcctgcgcgacctg
ggcaacacggtgatcgtggtggagcacgacgaggagaccatccgcgaggcggaccacgtg
gtcgacatcggccccggtgccggcaagcacgggggcgaagtggtcgcggccggaacgccc
ggggaggtcgcggccaacccccggtcgatcaccggccagtacctgtcgggccggctggag
atccccgtgccccgcatccggcgcggtgggccggcgagggatggcgccgggaagggcgag
cggcccaccctctgggtgcggggcgcccgggagcacaacctgaagggtgtcgacgtggcc
ttccccctggggctcttcatctgcgtgacgggcgtctccggctcgggcaagagcaccctt
gtgaacgagatcctctaccagcagctcgcccgggacctgaacggcgccaacgtccgggcg
ggccggcacgacgccatcgagggcgccgagtacctggagaaggcgatccagatcgaccag
tcgcccatcggccgcacgccccggtccaacccggccacctacacgggcgccttcacgggg
atccgcgagctcttctcccgcacccctgaggcccgggcccggggctacctgcccggccgc
ttcagcttcaacgtgaagggcgggcgctgcgaggcctgccagggcgacggcatcatcaag
atcgagatgcacttcctgcccgacgtctacgtgccgtgcgaggtctgcaaggggcggcgc
tacaaccgggagaccctggaggtcacctacaaggggaagaccatctccgacgtcctgggg
atgacggtggaggaggcgctggacttcttcggcatcatccccggcatcgagcccaagctc
cgcaccctgaacgacgtgggcctgggctacatcgagctgggccagccggccacccagctc
tcgggcggcgaggcgcagcgcgtgaagctggccaccgagctggcccgccgcagccgggga
cgcaccctgtacatcctggacgagcccaccaccggcctccacacccacgacatccgcaac
ctcctggacgtgctcgcccggctggtggaccagggaaacacggtggtcgtcatcgagcac
aacctggacgtgatcaagaccgcggactacctcatcgacctgggccccgagggcggcgag
gcgggcggccaggtgatcgccaccggtacccccgaggaggtggccctcaacgcccgctcg
tacacgggccagttcctccgtcccatcctggagcgggcggggacccttcccacggcccga
tcctccaggaacggccgcgcgcgcgggcggcaagccgcggacggccccgccgaccgggtg
gccgaaggctcgggcgccgtggtaccatag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (61)   

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