KEGG   Lactiplantibacillus plantarum WCFS1: lp_1022
Entry
lp_1022           CDS       T00115                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lpl  Lactiplantibacillus plantarum WCFS1
Pathway
lpl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lpl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    lp_1022 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lpl03021]
    lp_1022 (rpoC)
   03400 DNA repair and recombination proteins [BR:lpl03400]
    lp_1022 (rpoC)
Enzymes [BR:lpl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     lp_1022 (rpoC)
Transcription machinery [BR:lpl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     lp_1022 (rpoC)
DNA repair and recombination proteins [BR:lpl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      lp_1022 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CCC78438
UniProt: Q88XZ2
Position
943593..947234
AA seq 1213 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIESGNTPLEKKQLLSEREYREKKAQYGNEFEAAMGAEAIKRLLN
NVDLEKEARDLKETLKDASGQKRTRAVRRLDIIEAFVTSGNEPAWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQ
MALELFKPFIMKELVKRELASNIKNAKRKIEHADDDVWGVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
APKDGKPVVTPSQDMVIGNYYLTTEEIGREGEGMIFKDLNEAQKAYQSGYVHLHSRVGIQ
VSSMPDKPFTDDQKQAVLVTTVGKAIFNNILPGKFPYLNEPTNDNLIAGTPDKYFLKPGE
DIHQFLDAQEIIPPFKKGFLADIIAEVYKQYHVTATSLLLDRMKDLGYNISTKSGLTVGV
ADITGLKEKPAIIAEAHKQVNTISKQFRRGLITDDERYERVIGVWNDAKDQIQQKLIESF
NADNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLRIHAIMEGNEVIEPLY
DRILGRYTMKTVFDPETHDEIVGNNVLIDEDLAHKIVDAGVTEVTIRSAFTCNTKHGVCE
HCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGDDITQGLPRVQEIV
ESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPLTARMAVSEGDFIH
RGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKHVEIMIRQMLRKVR
VMDPGDTDVLPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITKAALETNSFLSAASF
QETTRVLTDAAIRGKNDPLIGLKENVIIGKIIPAGTGMPVYRHIKPKEVGNVADGVYSIS
DLEKQMQEQDASK
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttgatcgatgtcaacaagtttgaaagcatgcaaatcggtctggcatccccagacaagatt
cgcagctggtcatatggcgaagtcaaaaagccagaaaccattaactaccggacattgaaa
cctgaaaaagacggtctgtttgacgaacggatttttggtcctactaaggattgggaatgt
gcttgtggtaaatacaaacggattcgttataagggtattgtctgtgaccgttgtggggtc
gaagtgactcgtagtaaagtccgtcgtgaacggatgggtcatatcgaacttgccgcacca
gttactcacatctggtactttaagggaattcctagccggatgggcttagtcttagacatg
agtccccgggcacttgaagaaatcatttacttcgcttcatacgtcgttatcgaatctggt
aatacgccacttgaaaagaagcaattactttctgaacgtgaataccgtgagaagaaggct
caatatggtaacgaatttgaagctgccatgggtgccgaagccatcaaacggttattgaat
aacgtggatcttgaaaaagaagcacgtgatttaaaggaaactctgaaggatgcttctggt
cagaagcggacccgggccgttcggcggcttgatatcatcgaagctttcgtgacatctggt
aacgaaccagcttggatggtaatggacgcaattccggttattcccccggacttacggcca
atggttcaattggaaggtggtcgttttgccacctctgacttgaacgacttgtaccggcgg
gttatcaaccgtaataaccggttgaaacgcttgttggacttaaatgcacctgggattatc
gtgcaaaacgaaaagcggatgttgcaagaagccgttgatgcgttgatcgataatggtcgt
cgtggccgtcccgttgctggtcctggtaaccggccattgaagtctctttcacacatgttg
aaagggaagcaagggcggttccgtcaaaacttacttggtaagcgggttgactattctggt
cgttcggttatcgatgttgggcctttcttgaagatgaaccaaatgggcttaccacgtcaa
atggcgttggaattgttcaaaccgtttatcatgaaggaattggttaaacgtgaattagct
tctaacatcaagaatgctaagcgaaagatcgaacatgctgatgacgatgtctggggtgtg
ttggaagacgttatcaaggaacatcctgttctcttgaaccgcgcccctacgcttcaccgt
ttagggattcaagctttcgaacccgtcttggttagtggtaaagcgatgcggctccatcca
ttggcttgtgaagcttacaacgccgatttcgatggggaccaaatggctattcacgtccca
ctttcagatgaagcccaagctgaagcacggctcttaatgttggctgcccaccatattttg
gcgcctaaggacgggaaacccgttgttacgccatctcaagatatggttatcggtaactac
tacttgacgactgaagaaatcggtcgtgaaggcgaaggtatgatcttcaaggacttgaat
gaagcgcaaaaggcttaccaatcaggttatgtacatttgcatagccgggtcggcattcag
gtctcatcaatgcctgacaagccattcacggacgatcagaagcaagcagtcttagtcacg
acggttggtaaggcaatcttcaacaacattttgcctggcaagttcccttacttgaacgaa
ccaactaacgataacttgattgctggtacaccggacaagtatttcttgaagcctggtgaa
gatattcatcaattcttggatgcccaggaaatcattccaccattcaagaagggcttcttg
gccgacattatcgctgaagtttacaagcaatatcacgtgacagcaacgtcactcttgctt
gaccggatgaaggacttaggttacaacatttcaactaagtctggtttgacggttggggtt
gccgatattactggtttgaaagaaaaaccagcaattatcgccgaagcccataaacaagtt
aatacgatttcaaaacagttccgtcgtggtttaattactgatgacgaacgttatgaacgg
gtcattggtgtctggaacgacgctaaggaccaaatccaacaaaaactgattgaaagtttc
aacgcggataacccaatctttatgatgagtgattctggtgcgcgtggtaacatttcaaac
tttactcagttagctgggatgcgtggtttgatggctgcccctaacggtaagatcatggaa
ttaccaatcctttcaaacttccgtgaaggtttgtctgtcttggaaatgttcatttcaacc
cacggtgctcgtaaagggatgaccgatacggcgcttaagactgccaactcaggttacttg
actcggcgtctggttgatgtggctcaagatgttatcgttcgtgaaaaggattgtgggact
gaccgtgggttgcggattcacgcaatcatggaaggtaacgaagtcatcgaaccgttgtat
gaccggatcttaggtcgttacacgatgaagactgtctttgatcctgaaacgcatgatgaa
attgtcggtaacaacgtcttgatcgacgaagacttagctcataaaatcgttgatgctggt
gtaacggaagttacgatccgttctgcatttacttgcaacactaagcatggggtttgtgaa
cattgctacggccgtaacatggctactggtgatgaagttgaagttggtgaagctgttggg
acagttgccgcacagtctatcggtgaacccggtactcagctgaccatgcggaacttccat
accggtggtgttgccggggacgatattacccaagggttgcctcgtgtgcaagaaattgtg
gaatcacggaatcctaaagggcgtgccgaaatctcagaagttactgggacggttgaatta
attgaagaaaatccagcggaacggacgaaggaagttacggttaagggtgaaactgatacc
cggacttacacgttgccgttaacagcacggatggcggttagtgaaggcgactttattcac
cgtggtgctgcgttgaacattgggtcgatcgatcctaagcaattgattcaagtacgtgat
gtcttatcaactgaaaactacttgctccgtgaagttcaaaaggtttatcggatgcaaggg
gttgaaattggcgataagcacgttgaaatcatgattcggcaaatgttacggaaggttcgg
gtcatggatccgggcgataccgacgtcttgcctgggacgttaatggatattgcagacttc
aaggacgagaactacaagaccttgattgctggtggtattcctgcaacgtcacggccagtc
attcttgggattactaaagccgctcttgaaacgaatagtttcttgtcagctgcttcattc
caggaaacgacacgggtcttaactgatgctgctattcgtggtaagaacgatccactgatc
gggcttaaggaaaatgttatcattggtaagatcattcctgctgggactggtatgccggtt
taccgtcatatcaaaccaaaggaagttggcaacgtggctgatggggtttactcaatcagc
gaccttgaaaaacaaatgcaagaacaagatgctagcaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (49)   

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