KEGG   Legionella pneumophila subsp. pneumophila Thunder Bay: LP6_0097
Entry
LP6_0097          CDS       T02689                                 
Symbol
vacB
Name
(GenBank) (exo)ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lpm  Legionella pneumophila subsp. pneumophila Thunder Bay
Pathway
lpm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lpm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LP6_0097 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lpm03019]
    LP6_0097 (vacB)
   03016 Transfer RNA biogenesis [BR:lpm03016]
    LP6_0097 (vacB)
Enzymes [BR:lpm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LP6_0097 (vacB)
Messenger RNA biogenesis [BR:lpm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LP6_0097 (vacB)
Transfer RNA biogenesis [BR:lpm03016]
 Prokaryotic type
  tRNA degradation factors
   LP6_0097 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 HTH_12
Other DBs
NCBI-ProteinID: AGN13022
Position
104829..106928
AA seq 699 aa
MEILDEYGRPMSRSKLFDKLDLSSESQQESLGFRLKAMLRDGQIMQDRRGRFCLLQKINL
LRGTVQGHPDGFGFFIPDDGSEDMVLSAKEMRAVMHGDLVLAYQSGLDRRGRPEAKIHEV
LEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEFIGEAKNGQIVLVELIAYPNKRS
QAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVLAEVGKIPQQISEEQLKGRTDLR
NLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADVSHYVAKDSALDQEAARRGNSVY
FPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQEGKISRSRFYRAVIHSHARLTYT
SVGAWLEQGKADEKHQALWPMLESLYDLYHILLDTRRLRGAMDFETTETRIEFDENKKIK
CIVPVIRNDAHKLIEECMLAANVATARFLEKAEIPTLYRVHAAPEEDKITALRQFLGELG
LSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVMLRSLKQAQYVESNEGHFGLAYSAYTH
FTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHEDMNRLGKHSSMTERRADEATREVITW
LKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYVEGLVHVTSLKNDYYTFDSAKHRLIG
ARGGQVYRLGDKMTVLVARVDLNERKIDFEPVEDEVCNE
NT seq 2100 nt   +upstreamnt  +downstreamnt
atggaaatcctggatgaatacggcaggccaatgtctcgcagtaaactgtttgataaattg
gatttgagctctgagagccagcaggagtccttgggttttcgcttgaaggctatgctgcgt
gatggccaaatcatgcaggacaggcgtggacgcttttgtttattacaaaaaattaattta
ttgcgtggaacggttcaaggccatcctgatggttttggatttttcatcccggatgatggt
tctgaggatatggtgctctctgctaaagaaatgagggctgtcatgcatggagatctggtg
cttgcctatcaatctggattggatagaagaggaaggccagaagctaaaatccacgaagtc
ctggaacatgcgaataccacggttgtaggccgattttttactgatcatggcgtgaatttt
gtcattcctgatagcaaacgtctgactcaggatatttcaattccacaagaattcattggc
gaggccaaaaatggccaaatagtgctggttgagttgatcgcatatcctaacaagcgttcg
caagctataggcagagtaatccatattttgggtgagcatatggctcctggcatggaaatt
caagtagcaatccatgctcacggcattcctttcgaatggccagatgatgttcttgcggaa
gtgggtaaaattccacaacagatttccgaggaacaattaaaggggcgaaccgatttgcgt
aatcttccttttgtgaccattgacggggaagatgcaaaagattttgatgatgctgtgtat
tgttacaaaaagcccaaaggcggcttccaattgtatgtcgctatcgcagacgtcagtcat
tatgtggcgaaggattctgctttggatcaagaagcagcaaggcgaggaaattcagtttat
tttcccggtaaagtggtgccaatgctaccagaagccttatccaatggcgtttgctcgtta
aatccccatgttgaccgcttatgtatggtggctgagttatcgattacccaagaaggaaaa
atatcccgatcccgcttttatcgggcagtgattcattctcatgctcgtttgacctacacg
tcagttggggcatggctggaacaaggcaaggcagatgaaaaacatcaagccttgtggcct
atgcttgagtctctttatgatttatatcatattctgctcgatacccgtagacttagagga
gcaatggatttcgagactacggaaactcgtatcgaatttgatgaaaataagaaaataaaa
tgtatcgtgcctgtaatacgtaatgacgctcataaattaattgaagaatgcatgctggca
gcgaatgttgcaacagcaagatttttagaaaaggctgaaattcctactttataccgagtt
catgcggctcctgaagaggataaaattactgcattgaggcagtttttaggggagctggga
ttgtcattgggaggggggagaaaacctggacccaaggattttcagcgtaccatgaacatg
attggtgaccgaccagagaagcatcttattgaaacggtaatgctgcgttctttaaaacag
gctcagtacgttgaatcgaatgaaggtcattttggtttggcctattccgcttacacgcat
tttacatcaccaatcagaagatttcctgatctattaattcacagagcaatagggcattta
ttggataatcatcctgtttatgagtttgaatatagccatgaagatatgaatcgtttgggt
aaacattcctcgatgacggagcgccgtgctgatgaagcgacccgggaagtgattacctgg
ttaaagtgcgagtatatgcaagacaaattggggcaggtatttaagggtcgaatatccgct
gtgaccagctttggtatttttgtggaacttgatgaaatttatgtagaaggcttggttcat
gtcacttctttaaaaaacgattattatacgtttgactctgcaaaacatcgtttaataggg
gctcgcggcggtcaggtttatcgtttgggagataaaatgactgtgttggtagctcgtgtt
gatttaaacgaacgtaaaatagattttgagcctgtcgaggatgaagtttgtaatgaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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