KEGG   Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1): LPO_0373
Entry
LPO_0373          CDS       T02175                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lpo  Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
Pathway
lpo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lpo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LPO_0373 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lpo03021]
    LPO_0373 (rpoC)
   03400 DNA repair and recombination proteins [BR:lpo03400]
    LPO_0373 (rpoC)
Enzymes [BR:lpo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LPO_0373 (rpoC)
Transcription machinery [BR:lpo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LPO_0373 (rpoC)
DNA repair and recombination proteins [BR:lpo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LPO_0373 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: CCD04483
Position
397678..401925
AA seq 1415 aa
MATLSNDPMKKAPVMSDLLGILKQQGQSEEFDAIKIALASPELIRSWSYGEVKKPETINY
RTFKPERDGLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIE
LASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYL
DAMEQYGDEFDARMGAEAIRDLLRQIDLEDEIRNLREELPTTNSETKIKKITKRLKLLEA
FYESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLN
APDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKR
VDYSGRSVIVVGPTLKLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREES
VVWDILDDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQM
AVHVPLTLEAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTREKVNALGEGKI
YSSAQEAQNFYEAGHLDIHAKIKIRMPKEDGETGYHLVETTVGRAILAEILPKGMPFDYI
NRTMTKKVISKVIDSCYRKFGLKETVIFADQLMYTGFKYATRSGASIGIEDMEIPDDKAS
IIEHADNEVREIESQFRSGLVTNGERYNKVIDIWSRTNELVAKSMMSKIATEEVTDAKGN
KVRQESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQY
FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILMQPLIEGGDIV
EPLHERVLGRVVASDVYIPTQTEPVVKAGTLLDEEWVEKLEKHGVDQVMVRSPITCQTRF
GLCAKCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQI
KTKGVIRLHNIKTVTHENKNLVAVSRSGEVTIVDEFGRERERYKVPYGAVISAQDNSPVE
AGQVIATWDPHTHPVISEVSGRLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGR
DLRPMVKLVTDEGDDIYLAGTNVPAQYYLPVDAIVNFEDGSLVGIGDVIARIPQERSKTR
DITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKW
RHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHI
EVIVRQMLRKRVITFAGDSKFLVGEQVEESAMLQENDKLLAEGKQIARGTPILLGITKAS
LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKAKR
ARVAAGGDSSATHTVTASDVEHALSEALNADNHEH
NT seq 4248 nt   +upstreamnt  +downstreamnt
ttggctaccctaagcaacgacccaatgaaaaaagcaccagtaatgagtgatttacttggt
attcttaagcaacaaggtcaaagtgaagaatttgatgcaataaaaattgcactggcgtca
cctgaattaattcgatcatggtcctacggcgaagttaaaaaacctgaaacaatcaactac
aggacatttaagcctgaaagagatggtttgttttgcgctaaaacttttggtccagttaaa
gattatgagtgtttgtgtggaaagtacaagcgactaaagcatcgtggtgttatttgcgag
aagtgtggggttgaattggctcttgccaaagtgagacgagaaaggatggggcatatcgaa
ctcgctagcccagtcgctcacatatggttcttaaaatccttaccatcaagaattggtttg
ctcctcgatatgacactaagagatatcgagagagtactctattttgaagcttttgtcgtt
gttgatcctggaatgacagaacttgaaagagggcaactacttaacgacgaagcctatctt
gatgcgatggaacagtatggagatgagtttgacgcgcgtatgggcgcagaagcaattcgt
gatttattgcgccaaattgatctggaagatgaaattagaaatttacgtgaagagcttcca
acaactaactctgagacgaagattaaaaaaatcaccaaaagactcaagttattagaagct
ttttacgagtcaggaaataaaccagaatggatgatcatggatgtacttccagtgcttcca
cccgatttgagaccattggttccgctagatggtggacgttttgctacttcagacttgaat
gatttatacaggcgcgtcattaataggaacaaccgactaaagcgcctgctggatctgaat
gcgcctgacattatcgttcgtaacgaaaaacgaatgctgcaagaatccgtagatgcttta
cttgataacggcagaaggggtcgtgccatcactggtacaaataagagacctcttaaatca
ctggctgatatgattaaaggtaaacagggtcgtttcaggcaaaaccttttaggtaagcgt
gtcgactactctggacgttcagttattgtagttggaccaactttaaaattgcaccaatgc
ggattgcctaaaaaaatggcgttggaattattcaagccatttatattttccaagttggaa
tttagaggtttggcaactactatcaaagcagccaagaaaatggtcgaaagagaagaatcg
gtggtttgggatatattagatgatgttattagagagcatcctatccttttaaaccgtgct
cctaccttgcatagattgggtattcaagcatttgagcctgttttaattgaaggtaaagcg
atccagctccatcctttggtatgtacagcatacaacgctgacttcgatggagaccaaatg
gctgtgcacgtgcccttgacactggaagcgcagctggaagctcgttcattgatgatgtct
acaaacaatatattatctccagccagtggtgagccaattattgttcccagtcaggacgtc
gtccttgggttatactatttaacacgagaaaaggttaatgcattaggcgaaggaaaaata
tattcaagtgctcaggaagcgcaaaatttctatgaagcaggtcatttggatatccatgca
aaaataaaaattcgtatgcctaaagaagatggtgaaactggatatcatttagttgagaca
acagtcggccgcgccattttagctgagattttgcctaaaggaatgccatttgactatata
aaccgtacaatgacaaaaaaggttatctcaaaagtaatagacagctgttaccgcaaattc
ggcttgaaagaaacagtcatttttgctgatcagctaatgtataccgggtttaaatacgcc
acacgatctggagcatctataggtattgaagacatggaaataccagatgataaggccagt
attattgaacacgccgataatgaagtaagagaaatcgaatctcaattcagatcgggtttg
gtaacgaatggtgaacgatacaacaaggtaattgatatctggtcaagaactaatgaatta
gttgccaaatcaatgatgtctaaaattgcaacagaagaagtcactgatgcaaaaggcaac
aaagtaagacaagaatcatttaacccaattttcatgatggctgattctggagctagaggt
tctgctgctcagatacgacagcttgccgggatgcgaggtttgatggcagctccagatggc
tcaatcattgaaacgccaatcactgcaaacttccgcgaaggtttgaatgtattccagtac
tttatttctacacacggagctcgtaagggtttggcagatacggcgttaaagacagcaaac
tcagggtatctgacacgacgcttggtagatgttgcgcaggatgttgttattaccgaagat
gattgtggtactgatactggtattctaatgcaaccactgattgaaggtggtgatattgtt
gagcctttgcatgaacgcgtccttggacgggtggttgcttcagatgtctatattcctact
caaactgaaccagtagtcaaggctggaactttactggatgaagaatgggttgaaaaatta
gagaagcatggggtagaccaggttatggtcaggtcaccaatcacttgtcaaacaagattt
ggtctttgcgcaaaatgctatggtagagatcttgctcgtgggcatcttgtcaacacaggt
gaagcagtgggtattatcgcagcacaatcaatcggtgagccaggaacacagttaaccatg
cgtaccttccacattggaggtgctgcatcaagggcaacagctgcgaataatattcaaatt
aaaacgaaaggggttattcggttacataatataaagaccgtaactcatgagaataaaaac
ttggtggcagtttctcgctcaggtgaggtaactattgttgatgagttcggacgagaaaga
gagcgatataaagttccttatggtgcagtaatttcagcacaggataattctcctgttgaa
gctggtcaggttattgcaacatgggatcctcatacgcatcctgttatttccgaagtgtca
gggcgtttgaagtttgttgacctcattgatggcattacaatgaataggcaaactgatgaa
ttaaccggattaagcaatattgtaataattgatgccaaacaacggagtgctgcaggtcga
gatttgcgcccaatggtaaaattagttacagatgaaggggatgacatatatcttgcggga
accaatgttccggcacaatattatctacctgtcgatgccattgtgaactttgaagatgga
agtctggtgggaataggagatgttattgcccgtattccgcaagaacgttctaaaactcgt
gatattaccggaggtttgccaagagtagcggacttatttgaagccagaaaaccaaaggat
tctgcagtaatggcagaagtatcaggattggttaattttggtaaagaaaccaaaggtaag
cgacgcttgattatcaacgtatcggaagatcaatgtcatgaagagcttattcctaaatgg
cgtcatatttcagtgtttgaaggcgagcacgtagagcgtggtgaaatcatcgcagagggt
gcacttaaccctcatgatatattgcgcttgttaggtgttggagcgctggctaattacatt
gtaaatgaggttcaggacgtctatcgtttacaaggtgtgaaaattaatgataaacacatt
gaagtaattgtcagacaaatgctacgtaagagagttattactttcgctggtgactcaaaa
ttcctcgtaggagagcaagtagaagagagtgctatgcttcaggaaaatgataaacttctg
gctgaaggaaagcagattgcgcgaggtactcctattttactaggtatcacaaaagcttca
ttagctacagaatcgtttatatcagccgcttcattccaagagacaaccagagtcttgact
gaagcagcagtaagcggaaaagttgatgaattgcgtggtttaaaagaaaacgtgatggta
ggtcgcctaattccagcaggaacaggttatacttatcatcaaagccgaaaggcaaaaaga
gcaagggttgcagcaggcggagacagttcagcaacacacacagttactgcaagtgatgtt
gaacacgcgttgagtgaagcattaaacgcggataatcatgaacattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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