KEGG   Lactiplantibacillus plantarum subsp. plantarum P-8: LBP_cg0907
Entry
LBP_cg0907        CDS       T02670                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lpr  Lactiplantibacillus plantarum subsp. plantarum P-8
Pathway
lpr03030  DNA replication
lpr03410  Base excision repair
lpr03420  Nucleotide excision repair
lpr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lpr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LBP_cg0907
   03410 Base excision repair
    LBP_cg0907
   03420 Nucleotide excision repair
    LBP_cg0907
   03430 Mismatch repair
    LBP_cg0907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpr03032]
    LBP_cg0907
   03400 DNA repair and recombination proteins [BR:lpr03400]
    LBP_cg0907
Enzymes [BR:lpr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LBP_cg0907
DNA replication proteins [BR:lpr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LBP_cg0907
DNA repair and recombination proteins [BR:lpr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LBP_cg0907
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LBP_cg0907
   MMR (mismatch excision repair)
    DNA ligase
     LBP_cg0907
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LBP_cg0907
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT zf-NADH-PPase 5_3_exonuc Auto_anti-p27
Other DBs
NCBI-ProteinID: AGL63653
Position
943444..945483
AA seq 679 aa
MADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQ
LVTPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRLEQNVGHPVDYNCE
LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTRPLTIDVRGECYM
PKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLTAR
TQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLPLQ
RSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVARAS
LHNPDYVAAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVIPTTCPSCGAPLVH
LEDEVALRCINPKCPAQVQEGLVHFASRNAMNIDGLGPRIIAQLYANRLVSDVAGLYRLT
KAQLLTLDKIKDKSAEKLLTAIDRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEAL
MAASQEEIAAIDSMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNS
WFAGKRVVLTGKLESFTRPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLD
ITVWDEARFSETMREDAQA
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggcggacaaacccaacacaatgacggttgagcaggcggctgatgaagcggctgcttta
cggcaaacgttaaatgaatggcgtcggcagtactatgacgaagatgcgccgaacgttgaa
gatagtgtgtatgatcaaaagtatgaacggttggtcgaactcgaacaaacttttccacag
ctcgttacaccggattcaccgacgcaattagttggtggaacggttaaagcaggctttgat
aaagtgacccatgagattccgatgttgtcattgggcgacgtcttttcacaagctgagtta
caagagtttgttgatcgcttggaacaaaacgttggtcatccagtcgattataattgtgag
ttgaaaattgatggtttagcgctgtcgttacgttacgaagatggggtgctcgttcaaggg
tccacgcggggtaacggtacggttggcgaagatattacggctaatattaagacaatcaag
tcgattccacaacggttgacccgaccactgacgatcgatgtacgtggggaatgttatatg
cctaaggcagcgtttgctgccttgaatgaacgccgagaagcagcgggagaaccagtcttt
gcgaatccacgcaatgctgcggccggtacgttacggcagctagattcacgagtcgtggcg
gaacgacagctcagcacgtttatgtataacattgccgactatgaaccgttaaccgcccgt
acgcagagtgacatgttaacggagttcgcagatcttggttttgccatcaatcctgacttt
aaggtggcccattcgatggccgatgtctttagttacattgaccattatcaaaatgaacgg
ccagaattagcatatggcattgatggcatcgtgatcaaagctaacccgttaccgctgcaa
cgctcactaggagcgacagtcaaggtgccacgatgggcgattgcctttaagtttccacct
gatgagcagccgacccttttaaaggatgttgaatggaccgttggccgtacaggagtcgtt
acgccaactgcggttatggaacccgttcaactagctgggacgacggttgcgcgggcttcg
ttacacaatcccgattacgtggcggccaaagatgtccgcatcggtgatacggtcttgcta
cacaaggctggcgatattattccggaaatttcatcggttgatttagccaaacgacccaag
gatgcgcaaccattagttattccaaccacgtgtccgtcttgtggggcgccgctggttcat
ttggaagacgaagtggctttacggtgtattaacccgaaatgtccagcacaagtccaagaa
gggctggttcattttgcctctcgcaatgccatgaatatcgatggcttgggaccacgaatc
attgcgcaactctatgcaaatcggctggttagtgacgttgctggtttgtaccgattaact
aaggcacaactgttaacattagataaaataaaagataaatctgctgaaaagctcttgaca
gcaattgaccgtagccgtgataattcacttgaacggttattgttcggtcttggtattcgg
cacgttggtgctaaagtggcgcggttaatcgcgcagcattttgggacgattgaggcgttg
atggcagctagccaagaagagattgcggcgatcgattcgatgggcgatgtgattgcgaac
gcagtggttcaatattttgagagcgacgaagttcatacactcatccgcgaattgcaagca
gtcaacgtgaataccacttatcaaggccctagtgccaccgtggcagaagatagtaacagt
tggtttgcaggcaagcgggtcgtgttaactggtaagctggaaagctttacaaggccagat
gcgactcaatggctacaagctcacggcgccacggttacgggaagcgtctctaaaaagacg
gatctcgtgattgcaggtagcgatgccggaagcaagttgcaaaaagcacagcagctggac
attactgtatgggatgaagcccggttcagcgaaacaatgagggaggatgcacaagcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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