KEGG   Lactobacillus paragasseri: LpgJCM5343_10900
Entry
LpgJCM5343_10900  CDS       T05840                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
lpw  Lactobacillus paragasseri
Pathway
lpw03030  DNA replication
lpw03430  Mismatch repair
lpw03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lpw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LpgJCM5343_10900 (dnaE)
   03430 Mismatch repair
    LpgJCM5343_10900 (dnaE)
   03440 Homologous recombination
    LpgJCM5343_10900 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpw03032]
    LpgJCM5343_10900 (dnaE)
   03400 DNA repair and recombination proteins [BR:lpw03400]
    LpgJCM5343_10900 (dnaE)
Enzymes [BR:lpw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LpgJCM5343_10900 (dnaE)
DNA replication proteins [BR:lpw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LpgJCM5343_10900 (dnaE)
DNA repair and recombination proteins [BR:lpw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LpgJCM5343_10900 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB
Other DBs
NCBI-ProteinID: BBD48737
Position
complement(1139536..1142652)
AA seq 1038 aa
MGAVSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIK
PLLGMQLRINGLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENVLELEELK
KYLGHLVIITPSNIHSELKMLQANNPKMGANYIRTLKDSVPTSSSIYLGVYADQGQQEYI
NYLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKN
SEELQVNYRKFGIEDALENAEKIGQICSAQITFQDPQLPKFKQNKFPTSKEYLHSLAQNG
LAKRFKGRIPEKYQARLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGRGSAAGS
LVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYGMNHAA
QILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKELQLLVNT
NAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLGIPVTQQTKLNVES
LGLLKIDFLGLRNLTILGNIISALKLEGVEIDPNQIPLNDQETLALFQRGDTDAVFQFES
DGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGKEKVQYPDPSLKKILGPT
YGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKEREKFIQGAVKLGRRKEI
AEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLSLLNSNIGNRNKIAQY
LMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRGLRSDLLKQILEIKRPIKSMTD
FLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDLVESVKMAGSNLSLFETLEP
KIEEEKMPTAAEKSAMEVEAMGFSTGINPIIAVQKYARKYNAKRLQAFENNEQGIAVGKL
MKIKQITTKKGDNMAFAVFSDSSGDKDFTIFPQVWEKVGENLKIGEIYLLQVKTQSDRFS
PTKTQFLLSNARKVNFKD
NT seq 3117 nt   +upstreamnt  +downstreamnt
atgggagcagtgagtctgcaaaaccttagtagttttacattactggagagtccaactaaa
gttaaagatttagctgaaaacgcaaagaaaaaaggttattctgcactcgccttgacggat
gtaaatattacctatggcttagttaatttttataaagctgcaaaagaaactggaattaag
cctttattagggatgcagttaagaatcaacggcttggttgaccaggcaaataagtatgat
ttaattgtcattgctaaagacgatcaaggatataaaaatattttgcgtttatcaagtgcg
gtcaatcttttaaccgaaaatggtgaaaaagaaaatgttttagagcttgaagaattaaaa
aaatatctcggtcacttagttataattacgcctagtaacatacatagcgaactaaagatg
ctgcaagctaacaatcctaaaatgggagctaattatatccgtacactgaaagattctgtt
cctacatcttcatcaatttatttaggcgtttatgctgatcaaggacagcaagaatatata
aattatcttcgttcattagcaacgcaatttgagttattgttaactgcggttgaagacgga
caatatcttaatcgtaacgaacaatttttaagaagaactctgcaagctattaagagtaac
acccatttagaaaatgtggagcaattagctaagcaagctggttcgcattacttaaaaaat
agcgaagaattgcaggttaattatcgaaaatttgggattgaagatgctttagaaaacgct
gaaaaaataggtcaaatttgcagtgctcagattacgtttcaagatcctcaattgccaaag
ttcaaacaaaataagtttccaacatcaaaagaatatttgcattcattagcacaaaatgga
cttgctaaaagatttaaaggaaggattccggaaaaataccaagcaagattagattatgaa
ctaaaagtaatcaatgagatgggatttgatgattattttcttattgtgtgggatgtgatg
aactttgcccatagtgttcacattacaactggacctggacgaggctcagctgctggctca
cttgtttcatatgctttaagaattactgaagtcgatccacttgaatataatttgttattt
gaacgtttcttaaatcccgctcgtcaacaaatgccagatattgacttagatattccagat
aatcgacgtgatgaagtaataaaatatatgtttgaaaaatatggaatgaatcacgccgcc
caaattttaacctttggtactttggctgctaagcaagttctaaaagatgtttgtcgtgtt
tttggactaaataaagttgaaacctatcgctggttagatgcaatcccgcatgcaaaagga
aaaatcactttagcagaagcatatcaaaaatcaaaagagttacagcttttagttaataca
aatgcttttagtaaaattctatttgcgactgctgagcatttagaaaatttgccgcgtcat
tattcaattcatgcagctggtttagtaatcactgatgattcattagcagagattgtgggc
ttacaggcgggacctttaggaatacctgtaacgcagcaaaccaaattaaacgttgagtcc
ttaggattattgaaaattgactttttaggcttaagaaacttaactattttaggcaacatt
atttcagcgttaaagttagaaggagttgaaattgatcctaatcagattccgttaaatgat
caagaaacgcttgctttatttcagcgtggtgacacagatgccgtcttccaatttgaatcc
gatggaattaagcgcgttttagagcagcttcatcctgacagttttgaagacattgtcgct
gtaaatgctttatatcgcccaggtccaatgaataatattggtcatttcattaatagaaaa
catggcaaggaaaaagttcaatatcctgatcctagcttaaaaaaaatcttaggaccaact
tatggcgttttagtttatcaagagcaagttatgcagacggctcaagttttagctggtttt
tctttaggtgaagccgatcttttaaggcgagctatgtctaagaaaaacgctgatgtgatc
caaaaagaacgagagaagtttattcaaggcgctgtaaaacttggcagacgaaaagagata
gcagagcaggtttatgattatattgctcagtttgctaattatggatttaaccgttcgcat
gcagttgcatatagtaaaatcgccttttggctggcctattttaaggttcattatcctggc
gctttttatctttctcttttgaacagtaatattggcaatcgtaataagatcgctcaatac
ttgatgcaagcacaagaagctggaattaagactttgccaccagatattgagaacagtaag
gcggatttttcgcttgaaaacggcaaaattttagttggcttgaaggcagttcgcggatta
agaagtgatttgctgaaacaaatattagaaattaagcgtccgattaagtcaatgactgat
ttcttgtggaagattgataataatttgttgagtgctgatgctattgcaaatttaattaaa
gcaggtgcttttgatcgactagctccaaatcgaaatgaacttttaaaaataaataaagac
ctagttgaaagtgtaaagatggcaggttcaaatttatctttatttgaaactttggagccc
aaaatcgaagaagaaaaaatgccaactgctgctgaaaaatcagcgatggaagtagaagca
atgggctttagtactggaattaacccaatcattgctgttcaaaaatatgctagaaagtat
aacgcaaaaagattgcaggcttttgaaaacaatgaacaggggattgcagttggcaaatta
atgaagataaagcaaatcaccactaaaaaaggtgataatatggctttcgcggtctttagc
gatagtagtggcgataaagattttacgatctttcctcaggtatgggagaaagtaggagaa
aacttaaagattggcgaaatatatttattgcaggtgaagacgcaaagtgatcgctttagt
ccgacaaagacgcagtttttactttcaaatgctcgcaaagttaattttaaagattaa

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