KEGG   Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_1401
Entry
LAR_1401          CDS       T00735                                 
Name
(GenBank) DNA-directed RNA polymerase beta-prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lrf  Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LAR_1401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrf03021]
    LAR_1401
   03400 DNA repair and recombination proteins [BR:lrf03400]
    LAR_1401
Enzymes [BR:lrf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LAR_1401
Transcription machinery [BR:lrf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LAR_1401
DNA repair and recombination proteins [BR:lrf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LAR_1401
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: BAG25917
UniProt: B2G8Y5
Position
complement(1576696..1580331)
AA seq 1211 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKAEYGDRFKAEMGAAAIQKLLA
DVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKLNQMGLPVP
MALELFKPFIMHELVKRGLSANVKSAKRKIDRSDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAELAYRNDYVSLQTRVGVQ
VSAFPEKPFTDDQRGKIMVTTVGKLLFNRIMPKDFAYINEPTDANIQNGVDDRFFLEPGQ
DIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEILDKAQKQVTLITKQFRRGLITDDERYERVIGAWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVKSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VEARNPKGRATITEVTGEVVSIEENPAERTKDITIKGETDTRTYTLPITARMKVAEGDFI
HRGAPLNEGSIDPKELIQVRDVLSTETYLLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDLLPGQLMDISQFRDANKDTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDI
EAKLKEEDKQN
NT seq 3636 nt   +upstreamnt  +downstreamnt
ttgattgatgtcaataaatttgaaagtatgcagatcggtctggcatctccagataagatc
cgtagttggtcatatggggaagttaaaaagcccgagactattaactaccggacattaaag
ccagaaaagcaaggtctgtttgacgaacgaatctttggcccaaccaaggattacgaatgt
gcgtgtggaaagtacaagcgtatccgttacaaaggtcgtgtttgtgaccgttgtggtgtt
gaggttactagtgcaaaagttcgtcgtgaacggatggggcacattgaattagctgctcct
gtatctcacatttggtactttaaaggaattccaagtcgaatggggcttgtattagatatg
agtccacgttcgcttgaagaagttatttactttgcttcatatgttgttcttgatccaggt
gatactccacttgaaaagaaacaacttttaactgaagctgaatatcgtgataaaaaagca
gaatatggtgaccggttcaaagctgaaatgggagctgctgctattcaaaaacttttagct
gatgttgacttagaaaaggaagctgctgaattaaaggaagaattgaaagaagctactggt
caaaaacggactcgtgctattcgtcgtcttgatattcttgaagctttcattaagtcagga
aataagcctgaatggatggttatggatgtaattccagttatgccacctgacttgcggcca
atggttcaacttgaagggggacgttttgctacctccgatttgaacgatttatatcggcgg
gttattaaccgtaataaccggttgaagcgacttcttaaattacaagcacctggaattatt
gttcaaaatgaaaaacggatgcttcaagaagctgttgatgcattaatcgataatggtcgc
cgcggacgtccagtagctggaccaggtaaccgtccattgaagtcactttctcacttactt
aaaggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgactactctggc
cgttccgttattgatgttggtccatcattgaagttgaaccaaatgggattaccagttcca
atggcacttgaattatttaagccatttattatgcatgaattggtaaagcgtggtctttcc
gctaacgttaaatctgctaagcgtaagattgatcgcagtgatgatgatgtctttgatgta
ttggaagacgttattaaggaacacccagttctattgaaccgggcccctactcttcaccgg
ttaggtatccaagcgtttgaaccaatcttggtttctggtaagtcaatgcgtcttcaccca
ttagtatgttcagcatataacgctgactttgatggggaccagatggctattcacgttcca
ttatctgatgaagctcaagcggaagcccgtttgttaatgcttgctgctcaccatattctt
agtcctcgtgacggagaacctattgtttcaccatcacaggatatggttattggtaactac
tacatgactactgaagataagggtcgtgaaggtgaaggaatgatcttcaaggatactgat
gaagctgaacttgcttaccgcaatgactatgtttcattacaaacccgtgttggagttcaa
gtatctgcattccctgaaaagccattcactgatgaccaacgaggcaagatcatggtgaca
actgttggtaagcttcttttcaaccgaattatgccaaaagattttgcttacattaacgaa
ccaacagatgcaaatattcaaaatggtgttgacgatcgtttcttccttgaacctggtcaa
gatatccatgaataccttgaaaatgcaccattagttccaccatttaagaagggcttccta
tctgacttgatcgctgaagtatataagcgttacaaagttacaaagacgtcccaattctta
gaccgtattaaggacttaggttactacgaatcaactatttctggtttaactactgccatg
tctgatattcatgatttaccagaaaaaccagaaattcttgataaggcacaaaagcaagtt
actttaattactaagcaattccgtcgtggtttaattacagacgacgaacgttatgaacga
gtaatcggtgcatggaacgatgctaaggatgaggttcaaaacaagttaattgaacacatg
gatatccataacccaattaacatgatgtccgactctggtgcgcggggtaacatttcaaac
tttactcagttagctggaatgcgtggattgatggcatcaccaaacggtaagattatggaa
ttgcctgttaagtcaaacttctatgaaggactttcagtgttggaaatgtttatttcatca
cacggtgctcgtaaaggtatgactgatacagccttgaagactgccaactcaggttactta
actcgtcgtcttgttgatgttgcgcaagatgtggttgttcgtgaaaaagactgtggtact
gatcgcggacttgaagttactgctattacaaacggtaacgaaatgattgaaccgctttat
gatcgaatcatgggtcgttacactatgaagtctgtctttgatcctaaaactggtgaaaag
attgttggtaagaatgtccttattgacgaagaaatggctcaaaagattgttgatgccggc
gtaaagaaagtaactattcgttcagcatttacttgtaacactgaacatggtgtatgtgaa
cgttgttatggacgaaacgcagctactggtgaccgtgtagaagctggtgaagccgtcgga
actgttgccgctcaatcaattggtgaaccaggtactcagttaactcttcgtaacttccac
actggtggggttgctggtaacgatgatattactcaaggtcttccacgtatccaagaaatt
gttgaagcacgtaatcctaaaggtcgtgcaacaattacagaggttactggtgaagttgtg
tctatcgaagaaaaccctgctgaacggacgaaggatattacgattaagggtgagactgat
acccgaacttacactcttccaattacagcacggatgaaagttgctgaaggtgattttatt
caccgtggggcaccactaaatgaaggttcgattgatcctaaggaattaatccaagttcgt
gatgttctttctactgaaacttacctcttatcgcaagttcaaggtgtttaccggatgcag
ggtattgacttgttagataagcacgttgaaattatgattcgtcaaatgatgcggaaagtt
cgtgtcatggatccaggtgataccgaccttctaccgggtcaattaatggatattagtcaa
ttccgtgacgctaacaaggataccttagttgctggtaatattcctgcaacagctcgtcct
gttattcttggtattactaaggctgccttagagacaaacagtttcttgtcagctgcttca
ttccaagaaactacacgtgtattaactgatgctgctattcgtggtaagaacgatccatta
gttggattgaaagaaaatgttattattggtaagattattcctgcaggtactggtatgagt
gcttaccggaatatcaagccaaaagaagttagtgtagctgcttactcaattaaagatatt
gaggctaagttaaaagaagaagataagcaaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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