KEGG   Ligilactobacillus ruminis: LRC_12950
Entry
LRC_12950         CDS       T01626                                 
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
lrm  Ligilactobacillus ruminis
Pathway
lrm00470  D-Amino acid metabolism
lrm00550  Peptidoglycan biosynthesis
lrm01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:lrm00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    LRC_12950 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    LRC_12950 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:lrm01011]
    LRC_12950 (murD)
Enzymes [BR:lrm01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     LRC_12950 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:lrm01011]
 Precursor biosynthesis
  Amino acid ligase
   LRC_12950 (murD)
SSDB
Motif
Pfam: Mur_ligase_M MurD-like_N Mur_ligase_C AlaDh_PNT_C Pyr_redox_3 NAD_binding_7 MurD_N 2-Hacid_dh_C Pyr_redox DAO Thi4 FAD_binding_3 Pyr_redox_2 Shikimate_DH FAD_oxidored NAD_binding_8
Other DBs
NCBI-ProteinID: AEN78549
UniProt: G2SPU7
Position
complement(1347865..1349235)
AA seq 456 aa
MKDIKDYQGKNVLVVGLGKSGISAAYLLKRLGANVTINDKKKLENEDQLAAFSKRNIKCV
TGSHPLELLDDTDLIVKNPGIPYENELISAAVERNIPIITEPELAYRITESQLIGVTGTN
GKTTTTTMIALMLNQNREEGKAYTCGNIGISAAKVAQEVGEKDVMVTELSSFQLMGIEKL
RPHIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQKEDDYFVVNWDSEEWRNLSKLTKAK
IVPFSRQDTTEEGAYVKNGVIFFRGEEIMHVDEIKVPGSHNVENALAAISVAKIEGQSNE
NIAEVLRTFSGVRHRTQYVTTFNGRKFYNDSKATNMEATEKALSGFENPVVLLCGGLDRG
FTFERLVPYLKKHVKAMVVFGQTADLLEEAGKLAGIGQIEHAKDSSAAVSAAYEMSSEGD
IILLSPACASWDQWPTFEARGDAYIEEVEKLTREEK
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgaaagatataaaagattatcaaggtaagaacgttttggtcgttggtttgggaaaaagc
ggaatcagtgcagcttatttgttgaaaagacttggcgcaaacgttacgatcaacgataag
aaaaagcttgaaaacgaagatcagcttgcagctttttcaaaaagaaacattaagtgcgtt
acgggttctcatcccctcgagcttttggacgataccgatttgatcgttaaaaatccaggg
attccgtacgaaaatgagctgatttctgctgcggtcgaaagaaacattccgattataacg
gaaccggaacttgcgtatcgaattaccgaatcgcagcttatcggagttaccggaacaaac
ggaaagacaacaacaacaacgatgattgcgctcatgctcaatcaaaatcgtgaagagggc
aaagcttacacgtgcggtaacatcggcatttctgctgccaaggttgcgcaagaagtcgga
gaaaaagacgtaatggtgaccgaactgtccagttttcagctgatgggcattgaaaagctc
agacctcatattgcagttttgaccaatatttatgaagcgcataccgactatcacggatcg
agagaaaattatgtcaaagccaagatgagaatcgtgaagaatcaaaaagaagacgattac
tttgtcgtcaactgggattctgaagaatggcgcaatctttccaagctgacaaaggccaaa
atcgttccgttttcacgtcaagacacgactgaagaaggggcatacgtcaaaaacggagtg
attttcttcagaggagaagagatcatgcatgttgatgaaatcaaggttcccggttcacac
aacgttgagaatgctttggcagcaatttccgttgccaagattgaaggccaaagcaacgag
aatattgccgaggttttaagaacgttttccggtgttcgtcacagaacacagtacgtgacg
acctttaacgggcgcaaattttataatgactccaaagcaacgaatatggaagcaactgag
aaggccttgtcaggttttgaaaatccggtcgttttgctatgcgggggattggatcgaggc
tttactttcgagcgactcgttccgtatcttaaaaagcacgtcaaggcaatggtcgtcttc
ggacagacggccgatttattggaggaagcaggcaagcttgccggcattggtcagatcgag
catgcaaaagattcctcagccgccgtttcagctgcttatgagatgagttctgaaggagat
atcatcttgctttctcctgcctgcgcaagctgggatcagtggccgacgtttgaagcgcgc
ggggatgcatatattgaagaagtcgaaaaattgacacgggaggaaaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (35)   

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