KEGG   Lonchura striata domestica (Bengalese finch): 110467565
Entry
110467565         CDS       T05897                                 
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110467565 (CLP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsr03019]
    110467565 (CLP1)
Enzymes [BR:lsr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     110467565 (CLP1)
Messenger RNA biogenesis [BR:lsr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     110467565 (CLP1)
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N ATP_bind_1 AAA_22 AAA_16 TniB AAA_18 nSTAND3 MMR_HSR1 CbiA PduV-EutP AAA_24
Other DBs
NCBI-GeneID: 110467565
NCBI-ProteinID: XP_021380426
Position
5:61118738..61120958
AA seq 425 aa
MADDGGEEKKQVAKFELERETELRFEVEAGQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcggacgatggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggaggcggggcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgcaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctgtacatcgagcgcccggccgacgtggaggagggcttctccctg
caggccccgctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgg
gcgtcggtgagcggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagcgggacctgccccactttgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgc
atccgcgagtacttctacggtttccgtggctgcttctacccacacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggcgcgcccaccatcccggactcgtgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaagctggtaccggtgacgccggggagggac
atggtgcaccacctgctgagcgtcagcaccgccgacagccccgacgacaacatctccgag
accagcgtggccggcttcatcgtggtcaccggtgtggacctggagcgccaggtcttcacc
gtgctgtccccggctccacgccccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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