KEGG   Lonchura striata domestica (Bengalese finch): 110468324
Entry
110468324         CDS       T05897                                 
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr03022  Basal transcription factors
lsr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110468324 (ERCC3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    110468324 (ERCC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsr03021]
    110468324 (ERCC3)
   03400 DNA repair and recombination proteins [BR:lsr03400]
    110468324 (ERCC3)
Enzymes [BR:lsr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     110468324 (ERCC3)
Transcription machinery [BR:lsr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110468324 (ERCC3)
DNA repair and recombination proteins [BR:lsr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110468324 (ERCC3)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_22 AAA_34
Other DBs
NCBI-GeneID: 110468324
NCBI-ProteinID: XP_021381843
Position
7:24137397..24157616
AA seq 778 aa
MGRKERDKKKSKKRHYDDDEDDEDEGAGKEPQEAVPSAAGKQVEESGTKVDEYGAKDYRL
QMPLKADHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESTHPD
VIQQLLQDHVIKECRLRNAEGEETELITETFTSKSAISKSSEGGPSTSQGTDAQNKPDVP
ADLFEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPD
INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG
NSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAER
VMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIG
PKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQ
FLIKFHERRNDKIIVFADNVFALKEYAVRLGKPYIYGPTAQGERMQILQNFKHNPKINTI
FISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQ
DTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSTKEEQQQLLQKVLQASDLDAE
EEVVAGEYGSKSAQVSRRAGTMSSMSGADDTVYMEYHSSRSKASANKHIHPLFKRFRK
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgggcaggaaggagcgcgataagaagaagtccaagaagcgccattacgatgacgacgaa
gacgatgaggacgaaggtgccgggaaggagccgcaggaggcggtgccgtcggcggcgggg
aagcaggtggaggagagcggcaccaaggtggacgagtacggcgccaaggactaccggctg
cagatgcccctgaaggccgaccacagctcgcggccgctctgggtggctcctgatggccat
atatttttggaagccttttctccagtttacaaatatgcacaggactttctggttgctatt
gctgagcctgtgtgcagacccacccacattcatgagtacaagctgactgcttactccctg
tatgctgctgtgagtgtgggcttgcagacaagtgatatcactgagtatttgcagaaactg
agcaagactggtgtcccagatggaatcattcagtttatcaagctgtgcaccgtcagctat
gggaaggtgaagctggttctgaaacataacaggtattttgtggaaagtacgcaccctgat
gtcattcagcagcttctgcaagaccatgtaattaaagaatgtcgcctgagaaatgctgaa
ggtgaagagacagagctgattacagagacattcacaagtaaatcagcgatttccaaatct
agtgaaggtggtccatcaacttcacagggaacagatgctcagaataagccagatgtccct
gctgacttatttgagttttatgaacagatggacaaagatgaggaggaggaggaggaaacg
cagacagtgtcttttgaagtcaagcaggagatgattgaagaacttcagaagcgttgtatc
catttggagtaccccttgctggcagaatatgacttcagaaatgattctgtgaatcctgat
atcaatatagatctgaaacctactgcagtcctcaggccatatcaagagaaaagcctgagg
aagatgtttgggaatggacgagccaggtctggtgttattgtcttgccatgtggtgctggc
aagtccctggtgggagtgacagccgcgtgcactgtgcgcaagcggtgcctggtgctcggc
aactctgccgtgtctgtggagcagtggaaggcccagttcaagatgtggtccaccatcgac
gacagccagatctgtcgcttcacgtctgatgccaaagacaagcccattggctgttctgtt
gccatcagcacatactccatgttggggcacacgacaaaaaggtcttgggaagcagaaaga
gtaatggagtggcttaaaagtcaagaatggggccttatgatactggatgaagtccatacc
attcctgcaaaaatgttcagacgtgtgctcactatcgtccaagctcactgtaagctgggg
ctgactgctaccctggtcagagaagatgataaaattgttgacctgaacttcctgattgga
ccaaagctctatgaagccaactggatggagctgcagaacagtggctacattgctaaagtc
cagtgtgctgaggtctggtgcccgatgtcacctgaattttacagagaatatgtagctatt
aaaacaaaaaaaaggatactgctctacaccatgaacccaaataaattcagagcctgtcag
ttcctgattaagtttcatgagcgacggaatgataaaatcatcgtctttgctgataatgtg
tttgcactgaaggaatatgcagtcagacttgggaaaccttatatctatggtcctactgca
caaggggaaagaatgcaaattctacaaaacttcaagcacaatccaaaaatcaacactatt
ttcatttccaaggtaggggacacatccttcgatctgccagaagccaatgttctcattcag
atttcatcccatggtgggtcacgaaggcaggaggctcaaaggctgggacgagtgctgaga
gccaaaaaaggcatggttgcagaggaatacaatgcctttttttattctcttgtatcccaa
gacactcaggaaatggcatactcaacaaaacgacaacggtttctcgtagatcaaggttat
agcttcaaggtaatcacaaaattggcaggcatggaagaagaagagctttcattttcaacc
aaagaagagcagcagcagcttctccagaaagtcctgcaagcatctgacctggatgctgag
gaggaagtagttgctggggaatatggttcaaagtcagctcaggtgtcgcgccgcgcaggc
accatgagctccatgtcgggagcagatgacaccgtttacatggagtaccactcctcacgg
agcaaggcgtccgcaaacaagcacatccaccccctgttcaaacgcttccgcaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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