KEGG   Lonchura striata domestica (Bengalese finch): 110468512
Entry
110468512         CDS       T05897                                 
Symbol
SMARCA5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
  KO
K11654  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110468512 (SMARCA5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsr03021]
    110468512 (SMARCA5)
   03036 Chromosome and associated proteins [BR:lsr03036]
    110468512 (SMARCA5)
Transcription machinery [BR:lsr03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    NoRC (nucleolar remodeling complex)
     110468512 (SMARCA5)
Chromosome and associated proteins [BR:lsr03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    110468512 (SMARCA5)
   RSF complex
    110468512 (SMARCA5)
   WICH complex
    110468512 (SMARCA5)
   B-WICH complex
    110468512 (SMARCA5)
   NORC complex
    110468512 (SMARCA5)
   BRF complex
    110468512 (SMARCA5)
   NuRF complex (fruit fly)
    110468512 (SMARCA5)
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE HAND Helicase_C ResIII DEAD HDA2-3 Myb_DNA-binding DBINO AAA_14
Other DBs
NCBI-GeneID: 110468512
NCBI-ProteinID: XP_021382184
Position
4:11989206..12012148
AA seq 1039 aa
MSAGQPPRPDEPPAPPLPPGANTGEAAGTGPPCAAGLAGGDAKMEEPFDDTSLAKQKEIQ
ETDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQN
LLSAGDYRHRRTEQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQIRGLNWLISL
YENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLQNWMNEFKRWVPT
LRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIK
NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNC
LGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI
LNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPK
LKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHNERQASINAFNDPDSSKFV
FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE
ERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFASKDSEITDEDI
DHILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKLAFTEWIEPP
KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK
TIGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTNWNKRDFNQFI
KANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELR
QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQ
KRKMDGTPDGRGRKKKLKL
NT seq 3120 nt   +upstreamnt  +downstreamnt
atgtccgccgggcagccgccgcggccggacgagccgcccgcgccgccgctgccgccgggt
gccaacaccggcgaggccgcggggacggggccgccctgcgccgccggcctggccgggggc
gacgcgaagatggaggagccttttgatgatacgtctctggcaaagcaaaaagaaatccag
gaaacagatcctacatatgaagagaaaatgcaaacagacagagcaaacagatttgagtat
ctattgaagcagactgagctctttgctcatttcattcagcctgctgctcagaaaactcca
acttcacctttaaaaatgaaacctggacgtccacgaataaagaaggatgagaaacagaat
ttactgtcagctggcgactatcggcaccgtagaacagagcaggaagaggacgaggagctg
ttaacagaaagttccaagacaacaaatgtctgcactcgatttgaagaatctccatcatat
gtgaaatggggaaagctgcgtgattaccagatccgaggactgaactggctcatttctctg
tatgaaaatggcatcaatggtatcctggcagatgaaatgggtcttgggaagacgctgcaa
acaatttctcttcttggctatatgaaacactacagaaacattcctggacctcacatggtg
ttagttcccaagtccactctgcagaactggatgaatgaattcaagagatgggtaccaaca
cttcgagcagtttgtttgattggtgacaaagaccagcgagctgcctttgtgagagatgtg
ttgctgcctggagaatgggatgtctgtgtaacatcatatgaaatgcttatcaaagagaag
tcagtattcaaaaagttcaactggagataccttgttatagatgaggcccacaggattaaa
aatgaaaaatctaagttatcagaaattgtgagggaattcaagactaccaaccggctgcta
ttaactggaactccacttcagaacaatttacatgaactctgggcacttcttaacttcctt
ttgccagatgtgtttaactcagctgaagattttgattcgtggtttgataccaacaactgt
ctaggggatcaaaaactggtggagcgccttcatatggtgctacgaccattccttctccgt
cgcatcaaggctgatgtggagaaaagcttgcctccaaagaaggaagttaaaatttatgtg
ggcctcagcaaaatgcagcgagaatggtatacccgaatcctgatgaaggatatagatatc
ctgaactcagctgggaagctggacaagatgagactgctgaacatcctgatgcagctacga
aaatgctgcaatcacccatacctctttgatggagcagagcctggcccaccttacacaaca
gacatgcatttggtcactaatagtggcaaaatggtagttctggacaaattgctacctaag
ttgaaagaacaaggctcaagggttctaatcttcagtcagatgacaagagtcctagatatc
ttggaagattactgtatgtggaggaattatgaatattgcagactggatggacaaactcct
cacaatgagcgacaggcttccattaatgcattcaatgatcctgacagctcaaaatttgtg
ttcatgttgagtacacgagcaggaggtcttggaatcaatctggctactgctgatgttgta
attctttatgattcagactggaatccacaagtagacctccaggctatggatcgagcacac
agaattggccagaccaagactgtccgggtgttcaggtttattacagacaatactgtggag
gaaaggatagtggagcgtgcagaaatgaaactccgcctggattccatagtcatccagcaa
ggaagattggtggatcaaaacctgaataaacttgggaaggatgaaatgctgcaaatgatc
agacatggagcgacacatgtgtttgcctcaaaggatagtgagattacagatgaagatatt
gatcacattttggaaagaggggcaaagaagactgcggaaatgaacgaaaaactttcaaag
atgggtgaaagctcccttaggaattttactatggatactgaatctagcgtgtataatttt
gaaggggaagactacagagaaaaacagaagttggcatttacagagtggattgagccacct
aaaagagaaagaaaagccaattatgctgtggatgcttacttcagagaggctcttcgagtc
agtgaaccaaaagcacccaaggctccacggcctccaaaacagccaaatgtacaggacttc
cagttctttcctcctcgcctgtttgaactattggaaaaagagattctctactataggaaa
acaattggttacaaggtacctcgtaatcctgatctcccaaatgcagcccaagcacaaaag
gaagagcagcttaagattgatgaggctgaacctcttaatgatgaagaactagaagaaaaa
gagaaacttctaacccagggcttcactaactggaataagagagatttcaaccagttcatc
aaagccaatgagaagtggggccgtgatgacattgaaaatatagcacgagaagtcgaagga
aaaaccccagaggaagtcattgagtattcagctgtgttctgggaaagatgcaatgaactc
caagacatagagaagatcatggctcagatcgaaagaggagaagccagaatacagagacga
atcagcataaaaaaggctcttgatacaaagattgggagatataaagcccctttccaccaa
ctaagaatatcctatggtactaataaagggaagaattacactgaagaggaggatcgcttc
ctaatctgtatgcttcacaaactaggatttgataaagaaaatgtctatgatgaattaaga
caatgtatccgaaactcgccgcaattcagatttgactggtttctcaagtccagaactgca
atggaactgcaaaggaggtgtaatactttaatcactctaattgaaagagaaaacatggaa
ctggaagaaaaggaaaaggcagaaaagaagaaacgtggaccaaaaccatcttcggcacag
aagcgcaaaatggatggcactcctgatgggcgtgggagaaaaaagaagctaaagctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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