KEGG   Lonchura striata domestica (Bengalese finch): 110471014
Entry
110471014         CDS       T05897                                 
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1
  KO
K06225  patched 1
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr04340  Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04340 Hedgehog signaling pathway
    110471014 (PTCH1)
SSDB
Motif
Pfam: Patched Sterol-sensing
Other DBs
NCBI-GeneID: 110471014
NCBI-ProteinID: XP_021386824
Position
Z:complement(63163583..63230046)
AA seq 1443 aa
MASAGNASELETSSSAGGGGHPGRAPRNGGGRRRRTGGNRRAAVPDREYLQRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLIVGLLIFGAFAVGLRAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALRQHLE
SALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLNPA
DPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIIGGTVKNSSGKLVSAQAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSAIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVTRVIQVEPQAYVENDNTCYSPPPPYSSHSFAHETQITMQST
VQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSIH
CLEQPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIV
PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVAYVLLEEDRQLP
KMWLHYFRDWLQGLQDAFDSDWETGKITYNSYKNGSDDAVLAYKLLVQTGNHAKPIDISQ
LTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL
RIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFWEQY
IGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAV
PVVILIASVGIGVEFTVHVALAFLTAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLA
GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGQDRLPTPSPEPP
PGTVRFALPPGHTNNASDSSDSEYSSQTTVSGISEELHQYEATRGPGAPVHQVIVEATEN
PLFARSGVAQPEARHQPSPGLQLNPELGAQQPWQQGRQPKREAREGPRPPPYRPRRDAFE
ISTEGHSGPSSSRDRLGHKAHSHSARSPAFGAAGAAGAAYCQPITTVTASASVTVAVHPA
LHSHSARGASFPSYEGHHEAGHVPFEDPHVPFNVQCERRNSKVEVIELQDVECEERVPGN
SSQ
NT seq 4332 nt   +upstreamnt  +downstreamnt
atggcctcggccggtaacgcgtcggagctggagaccagcagcagcgcgggcggcggaggc
caccccggccgggcgccgagaaacggcggcgggaggcggcgaaggactggagggaatcgg
cgcgccgcggtgcctgaccgggagtatctgcagcgaccaagctactgcgatgcggctttc
gccttggagcagatttcaaaggggaaggcgacgggacggaaagcgccgctgtggctgcga
gcaaagtttcagagactgttgtttaaactgggctgttacatacagaaaaactgcggaaag
tttttgattgtcggcctcctgatatttggggctttcgctgtaggattaagggcagctaat
ctcgagaccaacgtggaggagctgtgggtggaagttggtggacgagtgagtcgggagtta
aattacacacggcagaagattggagaagaggccatgttcaacccccagctcatgatccag
actccacaggaagatggtgctaatgtactaacaacagaagcactccgacagcaccttgag
tctgcactccaggccagcagagtacatgtctatatgtacaacagacagtggaaattggaa
catttgtgttacaaatcaggagaactcatcacagaagcaggttacatggaccagatcata
gaatatctttatccttgcttaattatcactcctttggactgcttctgggagggagcaaag
ctacagtcaggaactgcctatctattagggaagcctcctttgcagtggatcaactttgac
cccttagaattcttggaagagttaaagaaaataaactaccaagtggagagctgggaagaa
atgctgaataaagcggaggttggtcatggttatatggatcgaccctgcctgaatcctgct
gatcctgattgcccaatcacagctcccaataaaaattccaccaaacctcttgatgtagcc
cttgttttgagtggtggatgctatggactatcaagaaaatatatgcattggcaggaggaa
ctgattataggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaggctttg
caaaccatgtttcagttaatgacccccaagcaaatgtatgagcatttcaaggggtatgag
tatgtttcacatatcaactggaatgaggacaaggcagcagcaattctggaagcctggcag
aggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaaggtgctt
tcctttactacaaccaccctggatgacatcttgaagtcattttctgatgtcagtgctatc
cgagtagctagtggctacttactaatgcttgcctatgcgtgtttaacgatgctgcggtgg
gactgtgccaagtctcagggtgctgtggggctggcaggagtcttgttggttgcactctct
gtggctgcaggattgggcctgtgctcattgattggaatttcctttaatgctgccacaact
caggttttgccttttcttgctcttggagttggtgtagatgatgttttccttctggcacat
gcattcagtgaaacaggacagaataagagaattccatttgaggacagaacaggtgaatgt
ctgaagcgaacaggagcaagtgtagcccttacatctatcagcaacgttactgctttcttt
atggctgccctaattcctattccagctttaagagcattttcactccaagcagcagttgtg
gtggtgttcaattttgctatggttctgctgattttccctgctatcctgagcatggacctt
tatcgtcgggaagacaggagactggacatattttgctgttttacaagcccgtgtgtcact
agagtgattcaggttgagcctcaagcatatgtggaaaatgacaatacttgctacagtcct
ccacccccctacagcagccacagctttgcacacgaaactcagattacaatgcagtccacg
gtgcagctgcgcacagaatatgatcctcacacgcaggtgtactacaccacagcagagccc
cgctcagaaatatctgtgcagccagtgacagtgacacaagataacctgagctgccagagc
ccagaaagcacaagctcgacgagggatttactttcccaattctcagactccagtatacat
tgccttgagcaaccctgtacaaagtggacactttcatcttttgcagaaaagcattatgct
ccattcctcttaaaaccaaaagctaagattgtggttatttttctttttctgggtttactt
gggctcagcctttatggaactacccgagtgagagatgggctagatctcacagacattgta
ccacgggaaacacgggaatatgactttattgctgcacagttcaagtacttttcattctac
aacatgtatattgtgacacagaaagccgactatccaaatgtccagcacttactttatgaa
cttcacagaagtttcagtaacgtggcatatgttttgttggaagaggataggcagctcccc
aaaatgtggttgcactactttcgagactggctgcaaggacttcaggatgcatttgacagc
gactgggaaactgggaagatcacttacaacagctacaaaaatggttctgatgatgctgtt
ttggcttacaaactcttggtacaaacaggcaaccatgcaaagcccattgacatcagccag
ttgactaaacagcgtctggtggatgcggatggaatcattaacccaaatgctttctacatc
tacctgacagcctgggttagcaatgaccctgtggcgtacgccgcctcgcaagccaacatc
cgcccgcaccgcccggagtgggtccatgacaaagcagactacatgccagaaacacggctg
aggattccagcagccgagcccatagaatatgctcagtttcctttctacctcaatggattg
cgtgaaacttctgactttgtggaggctatcgagaaagtgagagctatctgtaataactac
accagcctggggatctccagctaccctaatggttacccatttctcttctgggagcagtac
attggacttcgtcactggctcctcttatccattagcgtggttttagcttgcacgtttctg
gtgtgtgccctctttctcctaaacccttggacagctgggatcattgtggtggtgctggct
ctgatgactgtggagctgtttggcatgatgggtctaattggaataaagctgagtgcagtg
cctgtggttatcctgattgcttctgttggcattggtgtggaattcactgttcatgttgct
ttggcgtttttaactgccataggagacaggaaccatagggctgtccttgcattggaacac
atgttcgcaccagtgctggatggggctgtgtccactcttcttggggtgttaatgcttgca
ggatcagagtttgatttcattgtcaggtatttctttgctgttttggcaatcctaaccatt
ctgggagttctcaatggattggtgctgcttcctgttcttctctcattctttggaccatac
cctgaggtttctccagccaacggacaggacagattgcccacaccatctcctgagccaccc
cctggtactgtgaggtttgcactgccacctggccacacaaataatgcatcagattcctct
gattctgagtacagctctcaaaccacggtgtctggcatcagtgaagagctgcatcagtac
gaggccacacgaggtcctggggcgccagtccatcaagtaatagtggaagcaacagagaat
cctctctttgcaagatccggtgtggctcagccggaagcgaggcatcagccgagccctggg
ctgcagctgaatccagagctcggcgcgcagcagccgtggcagcagggcaggcagcccaaa
agggaagcgagggaagggccacggccgcctccgtaccgccctcgcagggacgcttttgag
atttctactgaagggcactcggggcccagcagcagcagggatcgcttgggccacaaggcg
cattcccacagcgctcggagcccggcgttcggagccgcgggcgccgccggagcagcctac
tgccagcccatcaccactgtgactgcctcggcctccgtcaccgtggctgtccaccctgcc
ctgcacagccacagcgcccggggagcgagctttccatcctatgagggacaccacgaagcc
ggccacgtgccatttgaggacccccacgtgccttttaatgtgcagtgtgaaagaagaaat
tctaaagtggaagttatagaattgcaagatgttgaatgtgaggaaagggtacctggcaac
agctcacaataa

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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