KEGG   Lonchura striata domestica (Bengalese finch): 110473752
Entry
110473752         CDS       T05897                                 
Symbol
RAPGEF2
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
  KO
K08018  Rap guanine nucleotide exchange factor 2
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr04010  MAPK signaling pathway
lsr04530  Tight junction
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    110473752 (RAPGEF2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    110473752 (RAPGEF2)
SSDB
Motif
Pfam: RasGEF RasGEF_N RA cNMP_binding PDZ PDZ_6 PDZ_2
Other DBs
NCBI-GeneID: 110473752
NCBI-ProteinID: XP_021392232
Position
4:31190156..31373831
AA seq 1650 aa
MASYVDNSFRQAVMKNPAERSPQDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERHEA
NEVLYYPDDIGTCWYILLSGSVFIKESMFLPRSSFGKRSAGSFRRGCECIVLEPSEMIVV
DYMEENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPVGKPPLPRGYHTECTKP
QLPADFTKLHLTDSLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATESEAGDMDLSGLP
ETAVDSEDDDDEEDIERASDPLMSRDIVRDCLEKDPIDRTDDDIEQLLEFMHQLPAFANM
TMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPDGRTEILCMGNSF
GVSPTMEKEYMKGVMRTKVDDCQFVCIAQQDYCRILNQVEKNMQKVEEEGEIVMVKEHRE
LDRTGTRKGHIVIKGTAERLTMHLVEEHSVVDPTFIEDFLLTYRTFLSSPMEVGKKLLEW
FNDPSLRDKVTRVVLLWVNNHFNDFEGDPAMTRFLEEFENNLEREKMGGHLRLLNIACAA
KAKRRLITLTKPSREAPLPFILLGGSEKGFGIFVDSVDFGSKATEAGLKRGDQILEVNGQ
NFENIQLTKAMEILRNNTHLSITVKTNLFVFKELLTRLSEEKRNGAPHLPKIGDIKKASR
YSIPDLAVDVEQVIGLEKVNKKSKANTVGGRNKLKKILDKTRISILPQKPYNDIGIGQSQ
DDSIVGLRQTKHIPPALPVSGTLSSSNPDLLQSHHRILDFNTTPDLPDQVLRVFKADQQS
RYIMISKDTTAKEVVIQAIREFALTATPDAYSLCEVSVTPEGVIKQRRLPDQLSKLADRI
QLSGRYYLKNNMETETLCSDEDAQELLRESQISLLQLSTVEVATQLSMRNFELFRNIEPT
EYIDDLFKLKSKTGCTNLKRFEEVINQETFWVASEILRETNQLKRMKIIKHFIKIALHCR
ECKNFNSMFAIISGLNLAPVARLRTTWEKLPSKYEKLFQDLQDLFDPSRNMAKYRNVLNN
QNLQPPIIPLFPVIKKDLTFLHEGNDSKVEGLVNFEKLRMIAKEIRHVGRMASVNMDPAL
MFRTRKKKWRSLGSLSQGSANAAVLDVAQAGGHKKRVRRSSFLNAKKLYEDAQMARKVKQ
YLSNLDLEMDEESLQTLSLQCEPATNTLPKNTGDKRSGKSETSPVAPRAGIQQKVQQQHK
VNQALQVPAVSLYPSRKKVPVKDLPPFGINSPQALKKILSLSEEGSLDRHKKQSEDTVSS
ASSQLSSPPTSPQSSPRKGYTLAPSSTVDNFSDSGHSEISSRSSIVSNSSFDSMPVPLHD
ERRQRHSVSIVETNLGVGRIDRRIMIEPDQYSLGSYAPLSETRGLYAGATVLSSPSTEEL
SQDQGDRASLDAADSGRGSWTSCSSGSHDNIQTIQHQRSWETLPFGHAHFDSSGDGAGLW
ASGGHMDQLMFPDHGTKYGRQSQGREGLDQAQSRASWASSTGYWGEDSEGDTGTIKRRGG
KDVSIEADTSSITSVPAEETKPAPVPAHTTAASSSTKGLVARKEGRYREPPPTPPGYVGI
PIAEFAEGGSHPTRKPPDYNIALQRSRMVARTCETHGTATPQQQSHGHSTGRPVNKPQWH
KPNESDPRLAHYPSQGFSTEEDEDEQVSAV
NT seq 4953 nt   +upstreamnt  +downstreamnt
atggcgtcctacgtggataacagcttccgccaggcggtgatgaagaacccggcggagcgc
agcccccaggacttggagattgtgtattcatatctacatggaatggaagcattgtctaat
ctgagagagcatcagctaagactgatgtgtgaaactgttagatatgaaaggcatgaagca
aatgaagttctgtactaccctgatgatattggtacctgttggtatatcctgctgtctggt
tcagtcttcattaaagaatccatgtttcttccaaggagcagttttggcaagcgttctgcc
ggcagcttcagacgtggatgtgaatgcattgttttagagccatctgaaatgattgtggtt
gattacatggaagaaaatgaggaatatttccagcgtcaagcatctcacaggcaatctcga
agaaggtttaggaaaatcaaccagaaaggggagcggcaaacaattattgatactgttgat
ccttatcctgtggggaagccacctctacctagaggctaccatacggaatgcactaaacct
cagcttcctgcagatttcacaaagctgcaccttactgacagtctccacccacaggtgacc
cacgtttcatctagtcactcaggatgtagcatcactagtgattcaggaagcagcagcctt
tctgatatctaccaggctactgaaagtgaggctggtgatatggatctcagtggattgcca
gagacagcagtggattctgaggatgatgatgacgaagaagacattgagagggcatcagat
cctttgatgagtagagatattgttagagactgcttggagaaagacccaatagacaggaca
gatgatgacattgaacaactactggaattcatgcatcaattgcctgcttttgccaacatg
acaatgtcagtgaggagagaactctgtgctgtaatggtatttgcagttgtggagagagca
ggaactattgtactaaacgatggggaagagctggattcctggtcagtcattttgaatggc
tctgtggaggtgacatatcctgatggaagaacagagatattatgtatggggaacagtttt
ggtgtttcccccaccatggaaaaggaatatatgaaaggagtgatgagaaccaaagtggat
gactgccagtttgtttgtatagcccagcaagattactgccgcatcctcaatcaagtggaa
aagaacatgcagaaggtagaagaggaaggggagattgtgatggtgaaggagcacagggag
cttgaccgcactggaacgagaaaaggccacattgtcatcaagggaacagctgaaaggtta
acaatgcatttggtggaagagcactcagtggtagacccaacatttatagaagacttcctg
ttgacgtataggacctttctttccagcccaatggaagtgggcaagaagttgttggagtgg
ttcaatgaccccagcctcagggataaggttacacgggtagtattgttgtgggtgaacaat
cacttcaatgattttgaaggagatcctgctatgactcgatttctggaagaatttgagaac
aatttggagagggagaaaatgggtggacatttgaggctgttaaatattgcttgtgctgct
aaagctaaacgaagattgataaccttaacaaagccatctcgagaagcccctttgcctttt
atcttgctgggagggtcagaaaagggatttggaatctttgttgacagtgtagattttggt
agcaaagctacagaagcaggcttgaaacgtggagaccagatactggaagtgaatggtcaa
aactttgaaaacattcagttgacaaaagccatggaaatccttagaaataacactcatctg
tctatcactgtgaaaaccaatttatttgtttttaaagaacttttaacaaggttgtcagag
gaaaaaagaaatggtgctccccacctgcctaaaattggtgatattaaaaaggcaagtcgt
tactccatccctgaccttgccgttgatgtggagcaggtaataggattagaaaaagtaaat
aagaaaagtaaagccaacacagttgggggaagaaataagttaaagaagatacttgacaag
actcgaatcagcattctgcctcagaaaccatacaatgacattggaattggccagtctcag
gatgacagcattgtgggactgaggcaaacaaagcacattcctcctgctttacctgtcagt
ggaaccctgtcatccagtaatcccgacctgttgcagtctcatcaccgcatcttagacttt
aatactactccagacttaccagaccaagttctgcgggttttcaaggcagaccagcaaagt
cgctacataatgatcagcaaggacacaacagcaaaggaagtggtcatccaggccatcagg
gaatttgctctgactgcaacccctgatgcctattcactgtgcgaggtctctgtcacacct
gagggggtcatcaagcaaaggagacttcctgatcagctatccaagcttgctgacaggata
cagctgagtggaaggtattacctgaagaacaacatggaaacagaaactctttgttcagat
gaagatgctcaagagttattgagggaaagccaaatttccctactacagctcagtactgtt
gaggtggctacccaactctccatgagaaactttgagctgttccgtaatatcgaacccaca
gaatacatagatgacttgtttaaactcaaatcaaaaacaggttgcactaatctaaaaagg
tttgaagaggtgataaatcaagaaacattctgggtggcttctgagatcctaagagaaacc
aatcagctgaaaaggatgaagatcattaagcatttcattaagatagcactgcactgcaga
gaatgcaagaacttcaactcgatgtttgccatcattagtggcctgaatttagcaccggtt
gcaaggctccgaactacttgggaaaagcttccaagcaagtatgaaaaactgtttcaagat
ctacaggacttgtttgatccttctaggaatatggcaaaatatcgtaatgtccttaacaac
caaaacctacagccccctattattcccctgtttcctgtcatcaaaaaagaccttacattc
cttcatgaaggaaatgattctaaagtggagggcctggtgaattttgagaagctgcggatg
attgcgaaggagatacgccatgtcggccgcatggcgtccgtgaacatggatcctgctctc
atgtttagaacaaggaagaagaaatggaggagtttggggtctctcagccagggcagtgcc
aatgcagctgtgctggatgttgcacaagcaggagggcataaaaagcgggtccgtcgcagc
tcctttcttaatgctaaaaagctctatgaagatgctcagatggcacggaaagtaaagcag
tatctctcaaacttggatctggaaatggatgaagagagcctccagacactctctctgcag
tgtgagccagccacaaacacattgccgaagaacacaggggacaagcgatctgggaaatct
gaaacgtcaccagtggctccccgggcaggcatccagcagaaagtgcagcagcagcataaa
gtgaaccaagcattgcaggtcccggccgtgtctctttatccctctcgcaagaaggtgcca
gtcaaagacctcccaccatttggcattaactccccacaagctttaaagaaaatcctttca
ttatcggaagaaggaagtttggatcgtcacaagaaacaatctgaagacactgtctcaagt
gcatcttcacagctgtcttctcctcctacttcaccacagagctctccaaggaaaggctac
actttagctccaagcagcaccgtggataacttctctgattctggtcacagtgaaatttct
tctagatctagtattgtcagcaattcctcttttgactctatgccagtccccctgcatgat
gagaggagacagaggcattctgtcagcattgtggagacaaatcttggtgtgggaaggatt
gatagaagaatcatgattgaaccagatcaatacagcttaggctcatatgcaccgctgtca
gagaccagaggcctgtatgctggagcaactgtactttcttctcctagtacagaagagctg
tcgcaggaccagggggacagagcttcactcgacgcagctgacagtggccgtgggagctgg
acttcttgttcgagtggttctcatgataacatccagacaattcagcaccagaggagctgg
gagactctgccttttggacacgctcattttgatagttcaggcgatggggcgggactgtgg
gcctcgggcggccacatggaccagctgatgttccctgaccatggcacaaagtatggcagg
caaagtcaaggtagggagggccttgatcaagcacagtccagagcaagctgggcatcttcc
acaggatactggggagaggactccgagggtgacacaggtaccataaagcggaggggtggg
aaggatgtttcgattgaagctgacaccagtagcataacatctgtaccagcagaggagaca
aagccagctcccgtccctgcccacacaacagcagcatcaagtagtacaaaggggcttgtt
gcaagaaaagagggtcgatatcgtgaaccacctccaactcctcctggttatgtagggata
cctattgctgagtttgcagaaggtggctcccatccaaccaggaagcctccagactacaac
atagcacttcagaggtctagaatggtggcacggacatgtgagactcatgggacagcaact
ccacagcagcagtcacacggccactcaactggcaggcctgtgaacaaacctcagtggcat
aaaccaaatgagtcagacccacgtcttgctcactatccatctcaagggttttccacagag
gaagatgaagatgaacaagtctctgctgtctaa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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