KEGG   Lonchura striata domestica (Bengalese finch): 110478752
Entry
110478752         CDS       T05897                                 
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr04510  Focal adhesion
lsr04512  ECM-receptor interaction
lsr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110478752 (COL4A2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110478752 (COL4A2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110478752 (COL4A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsr04147]
    110478752 (COL4A2)
   00536 Glycosaminoglycan binding proteins [BR:lsr00536]
    110478752 (COL4A2)
Exosome [BR:lsr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   110478752 (COL4A2)
Glycosaminoglycan binding proteins [BR:lsr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110478752 (COL4A2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 110478752
NCBI-ProteinID: XP_021401258
Position
1:24616304..24763895
AA seq 1715 aa
MDISQLPSARIFLCQDTGLLLILMEVVLSAVKVDAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDSGTPGLSGFPGSIGVQGPKGQKGEPYIVAPEI
IRQYRGDPGDSGIIGFPGPPGTLGIQGPIGPRGQRGRPGPPGPPGPPGPHGSRGLGFYGE
KGEQGPPGPPGPPGLPTRELTGVSPDKHKGERGDPGPRGEAGIPGVLLFPPEKGEEGVMG
YPGQRGLPGITGFPGLSGERGIPGFDGPPGGHGPRGSKGEPGEMGPPGPDSYFPSRIPRK
GARGDPGFPGVSGLPGDRGEEGDRGLPGLPGFSDADGDKPGLPGEMGPKGEKGEIGSPAF
YAGPPGIPGKDGSPGIRGPPGPIGAPGPLFGLKGREGAPGRFGIQGFPGPRGQKGPKGEE
GDCTRCLLGEELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPPG
FPGQKGEKGDSLHVTTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDVIRGF
PGDPGYPGELGPKGFPGEAGLPGEGFPGPKGFRGPPGDQGQAGNPGSPGLPGLPGEPGQL
DCGQVIEDFSRGDATEPIWSGAGCVRPPKGSQGKPGVPGATGAKGARGFPGDPGPMGFPG
LNGTRGDPGREGFPGPPGFTGPRGERGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAAAGSRGDVGLPGFPGLKGAPGDQGVPGTRGADGSPGLPGPKGDPGPQGLPGLTGLPGT
PGTHGFPGPPGNRGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGHTGL
PGIRGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMTGLKGRPGMKGMKGEFGPLGARGD
KGSQGARGFKGDRGDQGPPGEPPKLMPSMMMEVKGEKGDAGERGTKGSFGLKGSKGMPGL
PGKTGTPGSPGHPSYVAGVKGDIGAKGLTGVKGYPGPAGSPGIRGFPGTTGVRGEKGIPG
ISGHFGTPGSHGEIGDRGDTINLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGNPGTPGLRGQKGTPGWPGLPGQAGQPGFRGIS
GLHGLPGTKGLPGSPGLDGYGSAGFPGAVGDKGEAGEPSRVEGSRGPPGQKGERGVPGVP
GSFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGIPAPPGSKGESGET
GRTGEIGPKGSRGDPGLSGRPGLPGFPGPKGPRGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGSRGSPGE
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGFEGQPGRPGSPGPPGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq 5148 nt   +upstreamnt  +downstreamnt
atggacatctcgcagcttcccagtgcacgtattttcctttgtcaggatacggggcttttg
ctgatcctgatggaagttgtgctgtcagccgtcaaagtggacgctggtggaaagaagtac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggtcagccaggactacttggatcacagggattcactggaccaccaggattgatg
ggtatcccaggagtgcaaggtcccaaaggccacaaaggtgaaagaggatacccaggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccccggggcagatggc
attcctggtcatccaggtcagccaggaccaagggggaaaccaggtcatgatggctgtaat
gggacagcaggtgaccctggtgactcaggaactcctggactctctggtttccctggtagc
attggagtgcaagggcccaagggccagaaaggggagccgtacatagtagcgccggagatc
atcaggcaatacaggggagatcctggggattcagggatcattggttttccaggacctccg
ggtacactgggtattcaaggacctattggtccaagaggacagcgaggaagaccgggacca
ccaggacccccagggcccccaggaccacacggcagcaggggccttggcttctatggagaa
aaaggtgaacagggccccccaggtcctccaggtccacctgggcttcctacaagagagctg
acaggtgtctcccctgacaagcacaagggtgaaagaggagaccctggaccaagaggggaa
gctggaattccaggtgttcttctctttcctcccgaaaaaggtgaagaaggggtaatgggc
tacccaggacaaaggggactgcctggcatcactggttttccaggactcagtggagaaaga
ggtattccaggatttgatggtccgcctggtggccatgggcccagaggaagcaagggggag
cctggcgagatgggtcctccagggccagattcctattttccttcccgtatcccaaggaaa
ggtgcaagaggtgatccaggcttcccaggtgtgtctggactcccaggagaccgaggagaa
gagggagatcgtggattgcctggtcttcctggattttctgatgcggatggggataagccg
ggcttacctggagaaatgggaccaaaaggtgaaaagggtgaaataggatctcctgctttt
tatgcgggaccgcctgggattccgggtaaggatggttcacccggaattcgtggtccacct
ggtcccattggagcccctggtcctctctttggattaaaaggacgagagggagcaccaggt
agatttggtatacaaggtttccctggaccaagaggacaaaaaggacctaaaggtgaagaa
ggggattgcactagatgccttttgggtgaggagctcagaagaggctctactggcccccgt
ggccctcctggctttccaggaacccctggccagcctggaaggaagggagaacctggtgat
caaggaccacatggtcttcctggctaccctggagcaaaaggattttcgggtccacctgga
tttcctggacagaaaggagaaaagggagactctttacacgtaactacaaaaggtaccaaa
gggatccgaggagatcctgggctgcctggaatcagaggtgaagatggtttcccaggccga
gatggattggatggtttaccaggacagcctggcctcccgggtgatgttatcagaggtttc
cctggtgatcctggttatccaggtgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaaggcttccggggtcctccaggtgaccaagga
caagctggaaacccaggatctccaggtctgcctggtctgccaggagagcctggccaacta
gactgtgggcaggtcattgaagacttttctagaggagatgcaaccgaaccaatatggtca
ggtgcaggctgtgttaggccaccaaagggatcccaaggaaagccaggagtgccaggagcc
acaggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggtttcccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
ggacccaggggagagagaggcccaaatgggctgcctggactacagggacacccaggcctt
acaggaaaatccggagctccaggagcaccaggaccgaagggtcttcctggtgacgttttt
ggagcagcagcaggttcccgaggggatgttggcctccccggcttcccagggctgaaaggt
gcaccaggagatcaaggagtaccaggaactagaggagcggatggtagcccaggtttgcca
ggacccaaaggagatccagggccacaaggtctccctggtttgacaggattaccaggaaca
ccaggaacacatggattcccaggtccaccaggaaaccgtgggccagatggtggccccggc
tctcaaggacctcttggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccccgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtcacacgggactg
ccaggtatacgtggtgtgactggtccccctggcataagtggaatggatggctttccagga
gataaaggctcaagaggttcccccggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatgaagggaatgaaaggagaatttggcccacttggggctcggggagat
aaaggctcacagggtgcacgtggcttcaaaggtgatcgtggggatcaaggccccccagga
gaacctccaaagctcatgcccagcatgatgatggaagttaaaggtgaaaaaggagatgct
ggagaaaggggcacaaagggatcctttggcttaaaaggtagcaagggaatgccaggcctt
cctggaaagacaggaaccccagggtctcctgggcatcccagctacgtggctggtgtgaag
ggagacattggcgcgaaagggctgacaggtgtgaaagggtatcctggtcctgctggttct
cctggcatcagaggctttcctggcaccacaggagtcagaggagaaaagggcattccagga
atttcaggccatttcggtactcctggctcacatggagaaataggtgatcggggagatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccaggcttaacaggc
ataagaggaggtgtgggaccaaaaggagaaggtggtgatcctggtttccctggcattgaa
gggctcaagggcacacagggtgtccctggctctgtgggacaggaaggtttgccaggactg
gttggccccccagggcagcaaggaaaccctgggactcctggacttagaggtcaaaaggga
actcctggctggcctggcttaccaggacaagcaggccagcctggcttcagaggaatcagt
ggactgcatggtctaccaggcactaagggcttaccaggatcaccaggtctagatggatat
ggctctgcaggtttcccaggtgcagtgggtgacaaaggagaagcaggagagccaagcaga
gttgaaggcagccgaggacctccaggccagaagggagagagaggtgttccaggagtccca
ggatcctttggtattcctgggcaggaaggatttccaggacctcctgggatttcaaatata
tcaggatatcctggtgataaaggctccccaggtctagatggagtgccaggctatccagga
ccacaggggcagcctggaatacctgctccaccaggaagcaaaggagaaagtggagaaaca
ggtaggactggagaaattggcccaaaaggaagtagaggtgatcctggattatcaggaaga
cctggcctgcctggattccctggaccaaaaggtcctaggggtgaacaaggtgtcattggc
tttatgggcacagtaggatttccaggtgatctgggacccataggacccaagggagataga
ggagtaactggcttccagggacctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaaatataggacctcaaggaagccca
ggagatatgggacctcagggcccaccaggagatccaggttccagaggctcacctggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggggaacaagga
ggaatgggatttcagggtccggtgggatttgaaggtcagccaggccgccctggtagccct
gggccaccaggcatgccgggtcgcagtgtcagcatgggctacctgctggtgaagcacagc
cagtccgaccaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagc
ctactgtattttgaaggacaagagaaagcacataaccaggatctaggtctggctggctca
tgtttgtctcgttttagcaccatgccattcctctactgtaaccctggggatatttgttac
tatgcaagtcgaaatgataaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagacattaagccatatatcagtcgctgctcggtctgcgaggcccca
gctgtggcaattgctgtccacagtcaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacagtcactggtttctcctgggagctgcctggaagatttcagggcaactcctttcatt
gaatgcaacggcgcacgcggaacctgtcactactttgcaaacaaatacagcttctggctc
accaccatcgaccaacccttccaaagcaagccctcgggagacacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgcatgaagaacttatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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