KEGG   Lonchura striata domestica (Bengalese finch): 110483823
Entry
110483823         CDS       T05897                                 
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lsr03016]
    110483823 (RTCB)
Enzymes [BR:lsr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     110483823 (RTCB)
Transfer RNA biogenesis [BR:lsr03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    110483823 (RTCB)
 Prokaryotic type
   tRNA splicing ligases
    110483823 (RTCB)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 110483823
NCBI-ProteinID: XP_021409676
Position
1A:complement(63189278..63199047)
AA seq 505 aa
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggcttcttgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaggcagtggtttcaccaggtggtgttggctttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgatgtacagcctgtgaaa
gagcagctcgcccaggctatgtttgaccatattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgagagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattacgccgagattcaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagaggcctgggccaccaggttgccacagatgcactggtggctatggagaaagct
atgaaaagggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggccttcgccaaagtcttcaacacaacgcca
gatgaccttgacatgcacgttatctatgacgtgtctcacaacattgccaaagtggagcag
cacgtcgtggatggaaaggagaggactctgctggtgcacagaaagggatcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcccgtattg
attggtggcacaatgggcacctgtagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcgg
cgtaacttggacttccaggacgtactggacaaactggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccatgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag

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