KEGG   Lactuca sativa (garden lettuce): 111886017
Entry
111886017         CDS       T05352                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03250  Viral life cycle - HIV-1
lsv04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    111886017
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    111886017
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsv04131]
    111886017
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111886017
Membrane trafficking [BR:lsv04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    111886017
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    111886017
SSDB
Motif
Pfam: AAA MIT Vps4_C AAA_lid_3 AAA_5 AAA_16 RuvB_N AAA_14 AAA_22 TIP49 DUF815 AAA_2 AAA_17 AAA_33 IstB_IS21 RNA_helicase AAA_24 NACHT AAA_18 AAA_25 nSTAND3 Parvo_NS1 Mg_chelatase AAA_28 AAA_7 PhoH ResIII Torsin bpMoxR USP8_dimer Viral_helicase1
Other DBs
NCBI-GeneID: 111886017
NCBI-ProteinID: XP_023738025
Position
1:75902799..75905726
AA seq 436 aa
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT
EYLRRAEEIRAVLDEGGTGPAASGGDAAVAARPKTKPKDGEGGGGDGEDPEQSKLRAGLN
SAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKS
YLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLSGQ
RGEGNESEASRRIKTEILVQMQGVGHNDDKVLVLAATNTPYSLDQAIRRRFDKRIYIPLP
DMKARQHMFKVHLGDTPNNLTDSDFEALGRKTEGFSGSDIAVCVKDVLFEPVRKTQDAMF
FVNTNDGLWVPCGPKQPGAVQITMQELAAKGLASKISPPPIIRADFDKVLVRQRPTVSKS
DLELHERFTKEFGEEG
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgtatagcaatttcaaagaacaagcaatagagtacgtgaagcaagctgtacaagaggac
aatgctggaaattacgcaaaagcttttcccttgtacatgaacgctttggagtacttcaaa
acacacttaaagtacgaaaaaaaccctaagattcgtgaagcgattacgcagaaattcacc
gagtatttgcgtcgtgcggaggagattagggctgttctggatgaaggtggtacgggcccg
gcggctagcggaggtgatgcggcggtggcggcacggccaaagacgaaacccaaggatggg
gaagggggaggtggagatggggaagatcctgagcagtcaaagcttagggctggattgaac
tctgcgattgttcgggagaaacctaatgttaagtggaatgatgttgctggtcttgagagt
gctaagcaggctttacaagaagcggttattctaccggtgaagtttcctcagttttttact
ggtaaaaggagaccttggagagcttttcttttatatggtccacctggcacaggaaagtca
tacttagcaaaagctgttgctactgaagcagactctacatttttcagtgtatcttcttca
gatcttgtttcaaagtggatgggtgaaagtgaaaaactagtctcaaatcttttccaaatg
gcacgtgaaagtgcaccttccatcattttcattgatgaaattgactccttaagtggtcaa
cgtggtgagggcaatgaaagtgaagcttcaagacgtatcaaaaccgaaattcttgttcaa
atgcagggtgtaggacacaatgatgacaaagtcttagttcttgcagccacaaacacaccc
tactctcttgatcaggctataaggaggcgatttgataagcgtatatacattccactccca
gatatgaaagcaagacagcacatgttcaaagttcatttaggggatacgcctaataactta
actgatagtgactttgaagctttgggtcgtaagactgaagggttttctggttctgatatt
gctgtttgtgttaaggatgttttatttgaaccggtccgtaaaactcaagacgccatgttt
tttgttaacacaaacgacggcttgtgggtcccgtgtggacctaaacaacccggggctgtc
cagatcaccatgcaagagcttgcagcaaaaggactcgcttcaaagattagtccgccgcca
atcatacgggcggattttgataaggttttggtgaggcagaggccaactgtgagtaaaagt
gatcttgagcttcatgagagattcacaaaagaatttggggaagaaggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (31)   
   Pfam (31)   
All databases (45)   

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