KEGG   Lactuca sativa (garden lettuce): 111892831
Entry
111892831         CDS       T05352                                 
Name
(RefSeq) syntaxin-52
  KO
K08503  syntaxin of plants SYP5
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    111892831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsv04131]
    111892831
Membrane trafficking [BR:lsv04131]
 SNARE
  SNAP-25[C] (Qc)
   STX8
    111892831
SSDB
Motif
Pfam: SNARE NPV_P10 Syntaxin-6_N CLZ
Other DBs
NCBI-GeneID: 111892831
NCBI-ProteinID: XP_023744642
Position
9:complement(164051952..164053858)
AA seq 232 aa
MASSSDPWTREYNEASKLADDITSMISERSSFGSGPEAQRHSSAIRRKITILGTRLDSLQ
SLLTKLPAKQPLTEKEMNRRRDMLGNLRTKVTQMATTLNMSNFANRDSLLGPDIKPADAM
SRIAGLDNSGVVGLQRQIMREQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDEH
VEVTDSRLKRVQKNLAILNKRTKGGCSCLCLLLSVIGIAVLVVALYMIIKYL
NT seq 699 nt   +upstreamnt  +downstreamnt
atggcttcttcatcggatccatggacgagggaatataatgaagcctctaagcttgctgat
gatatcaccagcatgatatcagagaggagttcctttgggtcaggcccagaagcacagcgc
cattcatctgctattcggagaaaaatcaccatacttggaaccagacttgatagcttacag
tctcttctcacaaagcttcctgctaaacaacccttgacagagaaagaaatgaacagacgc
agagatatgcttggaaatttgagaacaaaggtaacacagatggccaccacattgaacatg
tcaaactttgctaatagggacagcttgcttgggccagatattaagccagctgatgccatg
agcagaattgctggtttggataactctggtgttgttgggcttcaaagacaaatcatgaga
gaacaagatgaaggcttagagaaactggaagagacagtgataagcaccaaacatattgct
ttagctgtcaatgaagaacttgacctgcacactagactcattgatgatctggatgaacat
gtagaagttacagattctcgactcaagagagtgcagaagaatttggcgattctaaataaa
cgaacaaagggtggttgctcatgcttgtgcctactgttgtcagtgattggaattgctgtc
ttggttgtggctctttatatgatcataaaatacttgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system