KEGG   Lactuca sativa (garden lettuce): 111904627
Entry
111904627         CDS       T05352                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    111904627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsv04131]
    111904627
   03029 Mitochondrial biogenesis [BR:lsv03029]
    111904627
Membrane trafficking [BR:lsv04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    111904627
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    111904627
Mitochondrial biogenesis [BR:lsv03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    111904627
SSDB
Motif
Pfam: WD40 ATG16 ANAPC4_WD40 NBCH_WD40 WDR54 SHE3 Cytochrom_D1 DUF5888
Other DBs
NCBI-GeneID: 111904627
NCBI-ProteinID: XP_023756137
Position
4:132142440..132145827
AA seq 511 aa
MAEDEVGINAIKHAMRALRKRHLMEEGAHAPAFTAISKPIASQGMEWKDKAETLELELQQ
CYKTQVRLSEQLVVEVAESRASKALVQEKEAIIPSLENEISQARDECSRLTALLEEKTKA
LKLLIGENQDLRTQYEDMRAKANNVEAENKTLIDRWNLQKMKDSERFNEVNALYQDILNK
LKASGLEQLARTQIDGVVRQSEQGAEHYVETTTIPKTCTHRITAHEGGCASLIFENSSGK
LISGGQDQTVKTWDTNTGSLTRTYHGCLGSILDLTITNDNNYIIAASSSNNLYVWDTNSG
RVRHTLTGHLDKVCAVDVSRCSSRHVVSSGYDRTIKVWDLNKGYCVNTIIFPSNCNTVCF
NSDGGTIISGHVDGHVRLWDIKTGKVLSEVAAHSLAVTSVCVSRNGNMVLTSGKDNLHHL
FDVRSLEVCGTFSGSGSKVASNWSRSCISPDDNYVAAGSVDGCVYVWSISKGDIASTLKE
HTASVLCCSWSGLGKPLATSGRNGTICLWSH
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggctgaggatgaagttgggataaacgcaataaagcatgccatgagagctcttagaaag
cgtcatctcatggaggagggagctcatgctcctgcttttacagctatttcaaaacctatt
gcttctcagggtatggagtggaaagataaggcagaaactcttgaattggaacttcaacaa
tgttataaaactcaagttcgattatcagagcagcttgttgtggaagttgcagagtccaga
gcatcaaaagctttagttcaggagaaagaagccataattcctagtcttgaaaatgagatt
tcccaagcaagggatgagtgttctcgtttaacagcacttttggaggaaaagacgaaagcc
ctaaagttgcttattggtgagaatcaggacttaagaactcaatatgaagatatgagagca
aaagctaacaatgtggaggctgaaaacaagacattaattgataggtggaatttgcagaaa
atgaaagattctgaacgttttaatgaggttaacgctctataccaagatatcctcaacaag
ctcaaagccagtggtctagaacaactcgccaggacacaaattgatggagtagttcgccaa
agtgaacaaggcgctgaacactacgtagagaccaccaccataccaaaaacatgcacacac
aggatcacagcccacgaaggcggctgcgcatccttaattttcgaaaacagttccggaaaa
ctaatcagcggtggacaagaccaaacagtcaaaacatgggacacaaacaccgggtcgcta
actcgcacctaccacggttgcctagggtcaatccttgacctcacaatcacaaacgacaac
aactatataatcgcagcaagtagctcaaataatttatacgtatgggatacaaattctggt
agggtccgccatacgctgactggtcatttggataaagtatgtgcggttgatgttagcaga
tgttcaagtcgccatgttgtcagttcgggttatgatcgtacgattaaagtgtgggatttg
aataaagggtattgtgtgaatactataatattcccgagtaattgtaatactgtatgtttt
aattcggatggggggacgattatttcgggtcatgttgatggacatgtgaggttatgggat
ataaaaacagggaaggtgttgagtgaggtggctgcacattctcttgctgttacttctgtt
tgtgtttctagaaatgggaatatggtgttgacaagtgggaaggataatttgcatcatttg
tttgatgtaaggagtcttgaagtttgtgggacgtttagtggaagtgggagtaaagttgct
tctaattggagtaggtcgtgtattagtccggatgataattatgttgctgcggggtctgtt
gatgggtgtgtttatgtgtggtcgatttcgaaaggtgatatagcgagtactcttaaagaa
catacggcttctgtactttgttgttcttggagtggtcttggaaagcctttagctacttcg
ggtaggaatggaactatctgtttgtggagccattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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