KEGG   Lactuca sativa (garden lettuce): 111910291
Entry
111910291         CDS       T05352                                 
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111910291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111910291
   03110 Chaperones and folding catalysts [BR:lsv03110]
    111910291
   03029 Mitochondrial biogenesis [BR:lsv03029]
    111910291
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsv04147]
    111910291
Enzymes [BR:lsv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     111910291
Messenger RNA biogenesis [BR:lsv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     111910291
Chaperones and folding catalysts [BR:lsv03110]
 Heat shock proteins
  HSP60 / Chaperonin
   111910291
Mitochondrial biogenesis [BR:lsv03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    111910291
Exosome [BR:lsv04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111910291
  Exosomal proteins of other body fluids (saliva and urine)
   111910291
  Exosomal proteins of breast cancer cells
   111910291
  Exosomal proteins of colorectal cancer cells
   111910291
  Exosomal proteins of bladder cancer cells
   111910291
SSDB
Motif
Pfam: Cpn60_TCP1 CFAP141
Other DBs
NCBI-GeneID: 111910291
NCBI-ProteinID: XP_023761872
Position
5:complement(288604105..288607767)
AA seq 603 aa
MASITPLSSIGTFGSTNKAVTSSLESLSSFSSISSTPLAHRRQNVVMHRRSTLKVNAMAK
EIYLNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVEL
EDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPIQITRGIEK
TTKALVEELKKMSKEVTDSELADVAAVSAGNNEEVGQMIAEAMSKVGRKGVVTLEEGKSA
ENHLYVVEGMQFDRGYLSPYFVTDSEKMSVEFENCKLLLVDKKVTNARDLVGVLEDAIKG
GYPILIIAEDVEQEALATLVVNKLRGSLKIAALKAPGFGDRKSQYLDDIAILTGGTVIRE
EVGLTLENAGSEVLGLAAKVVLTKDTTTIVGDGSTQELVNRRVAQIRNLVEAAEQDYEKE
KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLA
AKVDAIKETLENDEQKVGAEIVKRALGYPMKLIAKNAGVNGSVVIEKVLASDNYKFGYNA
ATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLTSDAVVVEIKEPEPMVAGNPMDNSG
YGY
NT seq 1812 nt   +upstreamnt  +downstreamnt
atggcgtctattactcccttgtcttccattggcacttttgggtcaacaaacaaggcagtc
acaagttcattggaaagcttgtcttcattttcttctatatcttccactcctcttgcacac
agaaggcaaaatgtagttatgcatagaagaagtaccctaaaggttaatgcaatggccaaa
gagatttacttaaacaaggacgggtctgctatcaagaagctgcaggctggtgtcaacaag
cttgcagatcttgtaggagttactctaggtccaaaagggcgaaatgtagtgttggaaagc
aagtatggttctccaaaaattgtaaatgatggtgtcaccgtggctaaagaggttgaattg
gaagaccctgttgagaacattggtgccaagctggtgagacaagcagcttcaaagacaaat
gatttggctggtgatgggacaacaacatcagttgttttagcacaaggcttaataacagag
ggcgttaaggtggtggcagcaggcgctaacccaattcagataacaagaggcattgaaaaa
accactaaagcccttgttgaagaactcaaaaagatgtcaaaagaagttacagatagtgag
ctggcagatgtggcagctgtaagtgcaggaaacaatgaagaagtagggcaaatgattgct
gaagcaatgagtaaagttggaagaaaaggtgttgtcactcttgaagaaggaaagagtgct
gaaaaccacttatatgtagttgaaggcatgcagtttgatcgtggttacctctctccatac
tttgttaccgatagtgagaaaatgtcagttgagtttgaaaactgcaagttgcttcttgtt
gataaaaaggtaacaaacgcaagagatttagttggtgttttggaagatgccataaaggga
ggatacccgattttaatcatagcagaagatgttgaacaagaagcccttgctacccttgtt
gtcaacaagctaagaggttcattaaagattgctgctctcaaggcacctggttttggtgac
agaaaaagtcaatatcttgatgatattgctattcttactggaggaactgtaatcagagag
gaggtagggttgacccttgagaatgctggaagtgaggttctagggcttgctgcaaaagtg
gtgttgaccaaagacacaaccaccattgttggtgatggaagcacacaggagttggtgaac
agacgggtggctcaaattagaaaccttgttgaggcagcagaacaagattatgaaaaagaa
aaattaaatgaaagaattgcaaaattatccggtggggttgctgttattcaagttggagca
caaactgaaactgaactcaaagaaaagaaacttagagtagaggatgctctcaatgcaaca
aaggcggctgttgaggaagggattgtggttgggggtgggtgcacattgttgcgccttgct
gctaaagtggatgccattaaagagactcttgagaatgatgaacagaaagtgggagctgaa
attgtgaaaagggcacttgggtacccgatgaagttgattgctaaaaatgcgggtgttaat
ggaagtgtggtgattgagaaggttttggcaagtgataattataagtttgggtataatgct
gcaaccgggaaatatgaagatttgatggcagctggtattattgatcccacaaaggtggtg
agatgttgtttggagcatgcatcgtcagttgcaaagacattccttacatcagatgctgtg
gtggttgaaatcaaggagccagaaccaatggttgctggaaaccccatggacaactcaggt
tatggttactga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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