KEGG   Lactuca sativa (garden lettuce): 111916290Help
Entry
111916290         CDS       T05352                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
lsv04141  Protein processing in endoplasmic reticulum
lsv04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111916290
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111916290
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    111916290
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lsv01009]
    111916290
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111916290
   03009 Ribosome biogenesis [BR:lsv03009]
    111916290
   03110 Chaperones and folding catalysts [BR:lsv03110]
    111916290
   04131 Membrane trafficking [BR:lsv04131]
    111916290
   03051 Proteasome [BR:lsv03051]
    111916290
   03029 Mitochondrial biogenesis [BR:lsv03029]
    111916290
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsv04147]
    111916290
Protein phosphatases and associated proteins [BR:lsv01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     111916290
Spliceosome [BR:lsv03041]
 Complex B
  Other components
   Prp19 complex
    111916290
 Complex C
   Prp19-CDC5 complex
    111916290
Ribosome biogenesis [BR:lsv03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    111916290
Chaperones and folding catalysts [BR:lsv03110]
 Heat shock proteins
  HSP70 / DNAK
   111916290
Membrane trafficking [BR:lsv04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    111916290
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    111916290
Proteasome [BR:lsv03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    111916290
Mitochondrial biogenesis [BR:lsv03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    111916290
Exosome [BR:lsv04147]
 Exosomal proteins
  Proteins found in most exosomes
   111916290
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl FtsA Hydantoinase_A DDR DUF2854 DUF1993
Motif
Other DBs
NCBI-GeneID: 111916290
NCBI-ProteinID: XP_023767677
Position
Unknown
AA seq 626 aa AA seqDB search
MSGRGKVPAIGIDLGTTYSCVSVWQHNNVEIIANDQGNRTTPSFVAFNDTERLVGDSAKN
QAAYNPTNTIFDVKRLIGRRASDEIVQKDMKLWPFKVEAGSDDKPKILVTYKGEEKEFSA
EEISSMVLAKMKRVAETFLGSDVEKAVITVPAHFNDSQRQSTKDAAKVAGLEVLRMINEP
TAAAIAYALEKRACEMNVLVFDIGGGTFDVSVISIDREGHIQVKATGGDTHLGGEDFDNR
MVKHFVEEIKRKHKEDISSNQRALGRLRVHCERAKRIVSTAVQTRIDIDCLVNGKDFSLK
FTRAKFEEVNMDLFNKCMEPVEQCLRDANMNKDSIDEVVLVGGSTRIPKVQQLLQELFNG
KSLCQNINPDEAVAHGAGILAAQLSGMGDEAVQGLELIDITPLSLGFKVKGDLMYVLIPR
NSPIPTKKEDTFCTSFENQTVVNFDVYQGERDKASENYLLGRLELSGFPSAPRGEVKFNA
CFEIDADGILNVSAREITSGVNKTIKITHNGSLSKEEIEKMIEDAERYKFEDEAHLKKVM
SHIALDNFVSKVQASLKKMGLNEKDLKDLDHQIAETIEWLDENPDAEEGELEDKKTELYN
LCTQKKLSHEAKASLNSLFDSVNFER
NT seq 1881 nt NT seq  +upstreamnt  +downstreamnt
atgtctggaagaggtaaagttccagccattggtatagatctcggaacaacatactcttgt
gtttctgtttggcaacacaacaacgttgagattatagcaaacgatcaaggcaatcggaca
actccctcttttgttgccttcaacgacactgaacgtttggttggggattctgccaagaac
caggctgcatataaccccaccaataccatattcgatgttaagcggttgattggaagaaga
gcgagtgatgaaattgttcaaaaagacatgaagttgtggccttttaaagttgaggctgga
agtgacgacaagccaaagattttagttacatataaaggtgaagagaaggaattttccgct
gaagaaatatcttccatggttttagcaaagatgaaaagggtagcagagacatttcttgga
tcagatgttgaaaaggcagtgatcactgttccagctcatttcaatgattctcaacgccaa
tcaacaaaggatgctgctaaagttgctggacttgaggttctgcgcatgattaacgaacct
actgcagctgcaattgcttatgctctagaaaagagagcttgtgaaatgaatgttctagtt
tttgacattggtggtggtacttttgatgtttctgttatcagtattgatagagagggacac
atccaggttaaagcaacgggtggtgacacacatttaggtggagaggattttgataaccga
atggttaaacattttgttgaagaaattaagagaaagcacaaagaggacattagtagcaac
caaagggctttaggtaggttgagggttcactgtgagagggcaaagaggattgtttcaaca
gctgttcagactagaattgacattgattgcttagttaatggtaaagatttttctttaaag
tttactcgtgcaaagttcgaggaggttaacatggatttgttcaataagtgtatggaacct
gtggaacagtgtttgagggatgcgaatatgaacaaggatagcattgatgaagtggttctt
gtcggtggatcaaccaggattcctaaggtacaacaattgttgcaagagttgttcaacgga
aagtcactttgccagaatatcaatcctgatgaggctgttgcacatggtgctggaattcta
gcagcacaattaagtggcatgggtgatgaagctgtgcagggtctggagctaattgacatt
actcctttatcacttggctttaaggttaaaggagatcttatgtatgtgttaattccaaga
aattcacctattccaaccaagaaggaagatacattctgtacgtcttttgaaaaccaaact
gttgtaaattttgatgtttatcaaggtgagagagacaaagcttctgagaactatctctta
ggaagacttgagctatctggctttccttctgctccaaggggggaagttaagttcaacgca
tgctttgagattgatgctgatgggatcttgaatgtttctgccagagaaataacctctggc
gtgaacaagacaatcaagataacacacaatggtagtttgtcgaaagaagagattgaaaag
atgattgaagatgctgaacgatataagtttgaagatgaagcacacttaaagaaggtgatg
tcccatatagctctagacaactttgtttccaaggttcaagcgagtcttaaaaaaatgggg
cttaatgaaaaagacttgaaagacctagaccaccagattgcagagacgattgagtggctt
gatgagaaccctgatgctgaagaaggtgagttggaggacaagaaaactgagctttacaat
ctatgcacacagaagaagttaagccatgaagcaaaagcttcacttaatagtttatttgat
tcagtaaactttgaacgctga

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