KEGG   Lactuca sativa (garden lettuce): 111917942
Entry
111917942         CDS       T05352                                 
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
  KO
K10858  DNA mismatch repair protein PMS2
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    111917942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111917942
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     111917942
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 111917942
NCBI-ProteinID: XP_023769342
Position
5:complement(370042598..370046877)
AA seq 929 aa
MEGDGAASSVMASPSIKPINKSAIHKICAGQVILDLPSAVKELVENSLDAGSTSIEIALK
EYGEESFQVIDNGCGISPDNFKVLALKHHTSKLADFSDLQSVTTFGFRGEALSALCYLGD
LTVETRTKSEQVATHLTFGRSGLLTDEKKTARQVGTTVTVKKLFSNLPVRSKEFHRNIRK
EYGKLISLLNAYALTAKGVRMVCTNTTGANKTSVVLKTQGSGSLKDNIITVFGMSTFNCL
EPMSLVISDSCKVDGFLSKSGNGSGRNIGDRQYFFINGRPVDMPKVTKLLNELYRSANSK
QYPIAIMNFIVPTKVYDVNVTPDKRKVFFSDEGSLLKSLKEALLEIYSPHLASFSVQGPE
ELTQGGNNSKLCSPHDKSFSQFSLKQASPDSKQEAYSEKQHVEVDTDMDEGKETLRSSPA
VNPINVDDYSLSKTDFTLKFHGMKKADTFSGSYSYSRKHTAISNNTRNNSQATSYNSTMQ
IGTDSPRSAGAVQSLLTTFVSVNKRKHESISSNSLSEVPVLRNGPNLHQSVDQNLHLCST
FTKPSDNHTLMMDDQHDELDVSPIKVMKNSGQVEELSDNHTLMMDEQHDELDVSPIKVMK
NSGQVEEVVDISSPLRCSQPGSGSDDGHGLEVIDICSDEAVASSPSKKCYTMQFSFEELK
KRRHQKLWALQASKNTPGKRNKAKGCYAAATLKLSQVVKEEAKAQALSAATNEFEKLFKK
QDFGRMKVIGQFNLGFIIGKLDEELFIVDQHAADEKYNYERLSRFTILNQQPLLRPVAME
LSPEEEVIVSMHMDTIRKNGFSLEEDLDAPPGQRYKMKAVPFSKNITFGVADVKELISIL
ADSQGECSMMGAYKMDTCDSVCPPRVRAMLASRACRSSVMIGDPLGRNEMKKIVERLMDL
KSPWNCPHGRPTMRHLLDLTTLRKCDSAL
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggaaggcgatggagcagcttcatcggtcatggcatctccatcgattaaacctataaac
aagagtgccatccacaaaatctgcgcaggccaagtgattttggacctcccctccgccgtt
aaggaattggtcgagaacagcttggacgccggctccactagcattgagattgccctaaag
gaatacggcgaagaatcgtttcaggtcattgataatggctgtggcatttcgccagacaat
ttcaaggttctagcgcttaagcatcatacgtcgaaattagcggatttttctgatcttcaa
tcggtgacgactttcggctttagaggggaagctctcagtgctctgtgttacttgggagat
ttaacagtcgaaacaagaacgaaaagcgagcaagttgcgacgcatttgacatttggccgt
tctggtttgcttaccgatgagaaaaagacggcacgccaagttggtaccactgttactgtg
aaaaagctgttctccaacctgccagtgcgaagcaaagagtttcaccgcaacattcggaag
gagtatggaaagttgatttcactattgaatgcatatgctcttactgcaaaaggtgttcgg
atggtttgtacaaatacaactggagcaaacaaaacctctgtagtacttaaaacacaggga
agcggttcactcaaagataacatcattacagtgtttggcatgagcactttcaactgctta
gaacctatgagtctagttatatcagattcctgcaaggtggatgggtttctttctaagtcg
ggcaatggcagtggacgaaatataggtgacagacagtatttttttataaatggtcgacct
gttgacatgccaaaagtcaccaagcttctgaacgaattgtatagatctgcaaactcaaag
caatatccaatcgcaatcatgaattttattgttccaaccaaggtgtacgatgtcaatgtg
accccagacaaaagaaaagtttttttctctgatgaaggctcccttttgaagtccttaaaa
gaagctttgttggagatctattccccacatcttgctagcttttcggtacagggacctgag
gagctcactcagggaggaaacaactcaaagctgtgttctcctcatgataagtctttttca
cagttttcattaaagcaagcatcgcctgatagcaaacaagaagcatacagtgagaagcaa
catgtagaagttgacactgatatggatgaaggtaaagagacattgagatcctcacctgct
gttaatccgataaatgtggatgattatagtttatcaaagacagactttacacttaaattt
catggtatgaagaaagctgacaccttttctgggagctatagctatagtaggaagcataca
gctataagtaacaacactagaaataattcgcaggcaacatcatacaactcaacaatgcag
ataggaacagattcgcctcgttctgcaggtgctgttcagtccctgcttacaacatttgta
tctgtaaacaaaaggaagcatgaaagcatcagcagcaatagtttatctgaggtccctgtt
cttagaaatgggcctaaccttcatcaatcagtcgatcaaaaccttcatttgtgttctaca
tttacaaagccttctgataatcatactctgatgatggatgatcagcatgatgaattagat
gtctctcctattaaagtcatgaagaactctggacaagttgaagagctttctgataatcat
actctgatgatggatgagcagcatgatgaattagatgtctctcctatcaaagtcatgaaa
aactcgggacaagttgaagaggtagtagatatttctagtccattacgttgttctcagcca
ggttcaggttcagatgatggacatggactggaagtaatagatatttgttcagatgaagca
gtggcttcttctccttcaaagaagtgttacaccatgcagtttagttttgaggagttaaag
aagaggaggcatcaaaagctttgggcattgcaggctagcaaaaatacacctggaaaacgg
aataaggctaaaggatgctatgctgctgcaacattaaagctttctcaagtggtaaaagag
gaggccaaggcacaggctttatctgcagcaacaaatgagtttgaaaagctgttcaaaaaa
caagattttgggcgcatgaaggtgattgggcagttcaatcttggatttatcattggcaag
ttggatgaagagctgtttatcgtggatcagcatgctgcagatgagaaatacaattatgag
cgtttgtcacggttcaccatcttgaaccaacaaccgttgctgaggccggtggcaatggag
ttgagtcctgaagaagaagtgatcgtttcaatgcacatggataccatcaggaaaaacggg
ttttcgttggaggaggatttggatgctcctcctgggcagcgttataaaatgaaagccgtc
cccttcagtaagaacataacttttggtgttgcagatgttaaggaactgatatctatcctg
gcggatagtcaaggagaatgctcaatgatgggtgcatataagatggacacgtgtgactcc
gtttgccccccaagagtgcgtgcaatgctagcatcacgtgcctgtagatcttctgttatg
attggagatccacttggaagaaacgagatgaaaaagatagttgagcgtttgatggatcta
aaatctccatggaattgtccacatggtagacccactatgcgtcacttgctagacttaaca
actctgcgtaaatgcgattcagccttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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