KEGG   Lactuca sativa (garden lettuce): 3772845
Entry
3772845           CDS       T05352                                 
Symbol
rpoB, LasaCp008
Name
(RefSeq) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    3772845 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    3772845 (rpoB)
   03400 DNA repair and recombination proteins [BR:lsv03400]
    3772845 (rpoB)
Enzymes [BR:lsv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     3772845 (rpoB)
Transcription machinery [BR:lsv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     3772845 (rpoB)
DNA repair and recombination proteins [BR:lsv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      3772845 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 3772845
NCBI-ProteinID: YP_398316
UniProt: Q56P13 A0A2J6KXP3
Position
Pltd:13019..16201
AA seq 1060 aa
MSTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDTNQEIDFELFLERYQLVEPSIKERD
AVYESLTYSSELYVSARLIWKNDRRRYIQEQTILIGKIPLMTSLGAFIVNGIYRIVINQI
LQSPGIYYQSELNDNGISVYTGTIISDWGGRLELEIDRKTRIWVRVSRQQKLSILVLLSA
MGLNIREILENVCYPELFLSFLNDKKQIGSKENAILEFYQQFACVEGDPVFSESLSKDLQ
KKFFQQRCELGGIGRRNMNRRLNLDIPQNNTFLLPRDILAAADRLIRIKFGMGTLDDMNH
LQNKRIRSVADLLQEQFGLALVRLENMARGNIYAALKHNWTPTPQNLVNSTPLTDTYKVF
FRLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTARTATFPIRDIHPSHYGRICPIDTSE
GINVGLIGSLAIHARIGRWGSLESPFYKISERSKGARMLYLSPGRDEYYMVAAGNSLALN
QGIQEEQVVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNM
QRQAVPLSQSEKCIVGTGLEGQAALDSGALAIAEHEGEIIYTDTDKILLSGNGDTLRIPL
VMYQRSNKNTCMHQKPQVQRGKCIKKGQILAYGAATVGGELALGKNVLVAYMPWEGYNFE
DAVLISERLVYEDIYTSFHIRKYEIQINQGSERVTNEIPHLEVHLLRNLDKNGIVMLGSW
VETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWV
QSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDM
VFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQ
TVNPWIFEPESPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGRYSRLT
QQPLKGRAKKGGQRVGEMEVWALEGFGVAYILQEMLTYKSDHIRARQEVLGTIIFGGRIP
TPEDAPESFRLFVRELRSLALELNHFLVSEKTFQLNRKEA
NT seq 3183 nt   +upstreamnt  +downstreamnt
atgtccacaatacctggatttaatcagatacaatttgaaggattttgtaggttcattgat
cagggtttgacagaagaactttctaagtttccaaaaattgaagatacaaatcaagaaatt
gactttgaattatttttggaaagatatcaattggtagaaccctcgataaaggaaagagat
gctgtgtatgaatcactcacatattcttctgaattatatgtatctgcgagactaatttgg
aaaaacgataggcgtaggtatatccaagaacaaacaattttgataggaaagatccctcta
atgacttctctgggagcttttatagtaaatggaatatatagaattgtgatcaatcaaata
ttgcaaagtcccggtatttattaccagtcagaattgaacgataatggaatttccgtctat
accggcaccataatatcagattggggaggaagattagaattagagattgatagaaaaaca
aggatatgggttcgcgtgagtaggcaacaaaaactatctattctagttctattatcagct
atggggttgaatataagagaaattctagagaatgtttgctatcctgaactatttttgtct
tttctgaatgataaaaaacaaatagggtcaaaagaaaatgctattttggagttttatcaa
caatttgcttgtgtagagggagatccggtattttctgaatccttatctaaggatttacaa
aaaaaattctttcaacaaagatgtgaattgggagggattggtcgacgaaatatgaatcgg
agactgaaccttgatataccccagaacaatacatttttgttaccgcgagatatattggca
gccgcggatcgtttgattcgaatcaaatttggaatgggtacacttgacgatatgaatcat
ttgcaaaataaacgtattcgttctgtagcagatcttttacaagagcaatttggattggcc
ttggttcgtttagaaaatatggctcgaggaaacatatatgcagcacttaagcataactgg
acaccaactcctcagaacttggtaaattcaaccccattaacagatacttataaagttttt
ttccgtttacacccattatctcaagttttggatcgaactaatccattgacacaaatagtt
catgggagaaaattgagttatttgggcccggggggattgactgcgcgaactgctactttt
ccaatacgagatattcatcctagtcactatgggcgtatttgcccaattgacacatctgaa
ggaataaatgttggacttattggatccttagcaattcatgccaggattggtcgttggggg
tctctagaaagtccgttttataaaatttctgagagatcaaaaggggcgcggatgctttat
ttatcaccgggcagagatgaatactatatggtagcggcaggaaattctttggccttgaat
cagggtattcaggaagaacaggttgttccagctcgatatcgtcaagaattcctgactatt
gcatgggaacaggttcatcttcgaagtattttttccttccaatatttttctattggagct
tccctcattccttttatcgagcataatgatgcgaatcgggctttaatgagttctaacatg
caacgccaagcagtccctctttctcagtccgagaagtgcattgttggaactggattggaa
ggccaagcggctctagattcaggggctcttgctatagccgaacacgagggagagattatt
tataccgatactgacaagatccttttatcaggtaatggggatactctaaggattccatta
gttatgtatcaacgttccaacaaaaatacttgtatgcatcaaaaaccccaggttcagcgg
ggtaaatgcattaaaaagggacaaattttagcgtatggtgctgctacagttggtggcgaa
ctcgctttggggaaaaacgtattagtagcttatatgccatgggaaggttacaattttgaa
gatgcagtactcattagtgagcgcttagtatatgaagatatttatacttcttttcacata
cgtaaatatgaaattcagattaaccaaggctccgaaagggtcactaatgaaataccacat
ttagaagtccatttactccgaaatttagacaaaaatggaattgtaatgctgggatcttgg
gtggaaacaggtgatattttagtaggtaaattaacgccccaaatggtgaaagaatcatcg
tatgcccccgaagatagattgttacgaaccatacttggcatgcgggtatatacttcaaaa
gaaacttgtctaaaattacctataggaggtaggggtcgggtgattgatgtgagatgggtc
cagagttctaagacagatgagacagagaaaacagaaagtattcgtgtatatattttacag
aaacgtgaaataaaagtaggcgataaagtagctggaagacatggaaataagggtatcatt
tcaaaaattttgcctagacaagatatgccttatttgcaagatggaagacctgttgatatg
gtcttcaacccattaggagtaccttcccgaatgaatgtaggacaaatatttgaatcttca
ctcgggttagctgggggtttgctagacagacattatcgaatagcgccttttgatgagaga
tatgaacaagaagcttcgagaaaactggtgttttctgaattatatgaagccagtaagcaa
acagtgaatccatggatatttgaacccgagtctccaggaaaaagcagaatatttgatgga
agaacaggggatccttttgaacaacctgttataataggaaagccttatatcttgaaatta
attcatcaagttgatgataaaatccatgggcgttccagtgggcgttattcacgtcttaca
caacaaccccttaaaggaagggccaagaaagggggacaacgggtaggagaaatggaggtt
tgggctttagaggggtttggcgttgcttatattttacaagagatgcttacttataaatct
gatcatattagagcgcgccaggaagtacttggtactataatctttggaggaagaataccg
actcctgaagatgctccagaatcttttcggttgttcgttcgagaactacgatctttagct
ctggaactgaatcattttcttgtatctgagaagactttccagcttaataggaaggaagct
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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