KEGG   Lachancea thermotolerans: KLTH0C07964g
Entry
KLTH0C07964g      CDS       T01117                                 
Name
(RefSeq) KLTH0C07964p
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
lth  Lachancea thermotolerans
Pathway
lth03013  Nucleocytoplasmic transport
lth03015  mRNA surveillance pathway
lth03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    KLTH0C07964g
  09122 Translation
   03013 Nucleocytoplasmic transport
    KLTH0C07964g
   03015 mRNA surveillance pathway
    KLTH0C07964g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lth03019]
    KLTH0C07964g
   03041 Spliceosome [BR:lth03041]
    KLTH0C07964g
   03009 Ribosome biogenesis [BR:lth03009]
    KLTH0C07964g
   03012 Translation factors [BR:lth03012]
    KLTH0C07964g
Enzymes [BR:lth01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     KLTH0C07964g
Messenger RNA biogenesis [BR:lth03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     KLTH0C07964g
   mRNA cycle factors
    Stress granule specific factors
     KLTH0C07964g
Spliceosome [BR:lth03041]
 Complex C
  Other components
   EJC/TREX
    KLTH0C07964g
Ribosome biogenesis [BR:lth03009]
 Eukaryotic type
  90S particles
   Helicases
    KLTH0C07964g
Translation factors [BR:lth03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    KLTH0C07964g
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA_22 TniB CMS1 tRNA-synt_1b CobA_CobO_BtuR
Other DBs
NCBI-GeneID: 8291442
NCBI-ProteinID: XP_002552569
UniProt: C5DEC0
Position
C:complement(679877..681073)
AA seq 398 aa
MSFSKDSDSKLKFKTSGKLKVSPTFESMHLKEDLLRGVYAYGFEAPSAIQSRAITQIISG
RDVIAQAQSGTGKTATFTIGMLQVIDFKSRELQSLVLSPTRELAKQISQVVGNLGDYMNI
SAHACTGGKAMQTDTKKLTHGCHVVSGTPGRVLDMIKRRILNTRHLKMLILDEADELLSE
TLGFKQQIYDIFAKLPKSVQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLEGIKQ
YHVNVDREEWKFDTLCDLYDSLTITQCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQ
EDRDRVMNDFRSGTSRVLISTDVWARGIDVQQVSLVINYDLPDNLENYIHRIGRSGRFGR
KGVAINFITRDDAQGLKAIEKHYSVKIRPMPANLAELS
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgtcgttcagtaaagactcggactccaagctcaagttcaaaacctctggcaagctgaag
gtttcgccaacattcgaatcgatgcatctgaaagaagaccttcttagaggtgtatacgcc
tacggtttcgaagcaccttccgcaatccagtcaagagcgataacacagatcatctcaggt
agagatgtgatcgcccaggcccaatctggtacaggtaagacagccactttcactattggc
atgctacaagtaatagacttcaaaagccgagagcttcagagcctggtgctttcgcccacg
agagagctggccaagcagatctcacaagttgtcgggaacctgggtgattacatgaacata
tccgcgcacgcttgcaccggtgggaaggcgatgcagacggacaccaaaaaactgacccac
ggctgccatgtagtgagtggcacgccaggccgagtgctggacatgataaagagaagaata
cttaataccaggcatttgaagatgctgattttggatgaggccgacgagcttctcagtgag
acgctcggcttcaaacaacagatctacgacatatttgcaaagctaccgaagtcagtgcaa
gtggtggtggtgagcgccaccatgagcaaagacatcttggaaatcaccaagaagttcatg
agcgaccccgtcaaaattttggttaaaagagacgagatctcactggagggcatcaagcag
taccacgtcaatgtggaccgcgaggagtggaaattcgacaccctgtgcgacctatacgat
tccctcaccataacgcagtgtgtgattttctgcaacaccaaaaaggtggtcgactggttg
tcgtcgaagctcttacaggccaacttcgccgttgcgtccatgcacggggacatgaagcag
gaggaccgggaccgggtgatgaacgactttcggtcgggcacctcgcgcgtgctaatttcc
accgacgtgtgggcacgagggatagatgtccagcaggtgtcgctggttatcaactacgat
ttgcccgacaacctcgagaactacatccaccgtatcgggcgcagcggtagattcggccgc
aagggtgtcgcaatcaacttcataacgcgcgatgacgcacagggcctgaaggcaatcgaa
aagcactacagcgtgaagattcggcccatgcctgcgaacctcgccgagctgtcataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system