KEGG   Luteimonas chenhongjianii: CNR27_02880
Entry
CNR27_02880       CDS       T05077                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lum  Luteimonas chenhongjianii
Pathway
lum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CNR27_02880 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lum03400]
    CNR27_02880 (ligD)
Enzymes [BR:lum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNR27_02880 (ligD)
DNA repair and recombination proteins [BR:lum03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CNR27_02880 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: ATD66528
UniProt: A0A290XC19
Position
complement(630914..633532)
AA seq 872 aa
MSLTEYRRKRRFDTTREPEPGKPAPRGQRAIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPLDYAGFEGEIPKGEYGGGHVARFDTGVWAADGDPEEGLAK
GHLRFELFGRKLKGRWHLVRSHKPARQPQWLLFKDRDEFAGALEADDLLADIPPPPAEDA
KRAGTGKARKRKEREVEAPAKRSDDWAAAARRLDGARRGAAPDGPFAPQLAKLGDAAPQG
EAWLHELKWDGYRLLATVARGKVRLWSRNAIEWTAKVPEITAAVARLGLKSAAFDGELIA
GRGSREDFNLLQGTLSGERQGALALVLFDLLHVDGVDISDAPLFARKALLQRILGERPPA
HLAYSAHIEGAAETAVELASESGFEGIISKRGDRPYRPGRGDDWRKTKELASDEYAVVGY
TPPKGSRNGFGSLLLARPDPEHGWRYAGRVGSGFSDALLTELTPRIGRAGRDVPTVFVPP
NDTDLRAAKWFAPRFVVEVFSRGTGGHGLLRQPSLKAVRPDKSVDDLHDSDRNGDDTMAS
PTATPTPRKRAAAKTAKPATASAPKRAAAARTGRAASTGSATTSDAPRTPPTLSSPEKVL
FPGDTLTKRDVADYYTAAMPWLLPEIAGRPQSVIRCPGGIASACFFQKHHTAGMTLVETV
RLKEESGSGDYLVVNDAAAALELVQFNALEFHPWGAHADAPDIADRIVFDLDPGEGVSWP
DIVAAARHVRELLKQLGLESFVRTTGGKGLHVVAPLSPGADWSVVKPFAHAFAQGMVELD
PLKYVATATKKFRKDRIFVDYLRNGRGATSVASFSLRARAGAPVSMPLRWEELGRVKSGD
AFTLRNAPARLKRLKAHPWGDYATLQQSLPDL
NT seq 2619 nt   +upstreamnt  +downstreamnt
gtgtcgctaaccgaataccggcgcaagcggcgcttcgatacgacccgcgagcccgagccg
ggcaagcccgcgccgcgtggccagcgtgcgatcttcgtcgtccagctgcaccatgccagc
cgccgccattacgatttccgtctgcagatcggcgatgcgctcaagagctgggcggtgccc
aaggggcccagctacgatccggccgtcaagcgcatggcggtcgaggtcgaagaccatccg
ctcgattacgcgggcttcgaaggcgagattcccaaaggggaatacggcggtggccatgtc
gcccgcttcgacaccggggtgtgggctgccgacggcgacccggaggaagggctagccaag
ggccatctgcgtttcgaactcttcggtcgcaagctgaagggtcgatggcatctggtgcga
tcccacaagccggcgcgtcagccgcaatggctgctgttcaaggaccgcgacgagttcgcc
ggcgcgctcgaggcagacgatcttctggccgatatccccccgccgccagccgaggatgcg
aaacgcgccggcaccggcaaggcgcgcaagcgcaaggagcgcgaggtcgaggcgccagcc
aagcgcagcgatgactgggcggccgccgcgcgcaggctcgacggtgccaggcgcggcgcg
gcgccggacgggcccttcgccccgcagctcgccaagctcggcgacgccgcgccgcagggc
gaggcctggctgcacgaactcaagtgggacggttaccgcctgctggccaccgtggcccgc
ggcaaggtgcggctgtggtcgcgcaatgcgatcgaatggaccgccaaggtccccgagatc
accgccgcggtcgcgcggctgggcctgaaatcggccgcgttcgatggcgagctcattgcc
gggcgcggcagccgcgaagacttcaacctgctgcagggcacgctctcgggcgagcgccag
ggcgccttggcgctggtgctgttcgacctgctgcatgtcgacggcgtcgacatctccgat
gcgccgctgttcgcgcgcaaggcgctgctgcagcgcattctcggcgagaggccgccggcg
cacctggcctacagcgcgcacatcgaaggcgcggccgagaccgcggtggaactggcctcg
gaatcgggcttcgaaggcatcatctccaagcgcggcgaccgcccctatcgccccggccgc
ggcgacgactggcgcaagaccaaggagctggccagcgacgaatacgcggtcgtcggttac
acaccgcccaagggcagccgcaacggtttcggttcgctgctgctggcccggcccgatccc
gagcacggctggcgctatgcgggccgcgtgggctcgggcttcagcgatgcgctgctgacc
gagctgaccccgaggatcggccgcgctggacgcgacgtgcccacggtcttcgtgccaccc
aacgacaccgacctgcgtgcggcgaaatggtttgcgccgagattcgtcgtcgaggtcttc
tcgcgcggcaccggagggcatgggcttctgcgccagccatcgctcaaggcggtgcgcccc
gacaagtccgtggacgatctgcatgacagcgaccgcaatggagacgacacgatggcgagt
ccgacagcgaccccgacgccacgcaagcgcgccgcagccaagaccgcgaagccggccacg
gcctcggcgccgaaacgcgctgcggccgccaggaccgggcgggccgcaagcaccgggtca
gccaccacttcggacgcgccgcgcacgccgcccaccctgtcgagtcccgagaaggtgctg
tttcccggcgacacgctgaccaagcgcgatgtcgccgactactacaccgcggcgatgccc
tggttgctgcccgagatcgccggccgtccccagtcggtgatccgctgcccgggcggcatc
gccagtgcctgcttcttccagaagcaccacaccgcgggcatgaccctggtcgagacggtg
cggctcaaggaggagtcgggcagcggtgactacctcgtcgtcaacgatgccgccgccgcg
ctcgagctggtgcagttcaatgcgctggagttccacccctggggggcgcatgcggatgcg
cccgacatcgccgaccgcatcgtgttcgatctcgatccgggtgaaggcgtcagctggccc
gacatcgtcgccgccgcgcgacatgtccgtgagctgctcaagcagctggggctggagtcg
ttcgtgcgcacgacgggaggaaagggcctgcatgtcgtcgcgccactgtcgcccggcgcc
gactggagcgtggtcaagccgttcgcgcatgccttcgcacagggcatggtggaactggac
ccgctgaagtacgtggcgacagccacaaagaaattccgcaaggaccgcatcttcgtggac
tacctgcgcaacggccgcggtgccaccagcgtggcctcgttctcgctgcgggcacgcgcc
ggcgcgccggtgtcgatgccgctgcgctgggaggagctcgggcgggtgaagtctggcgat
gccttcaccctgcgcaatgccccggcgcggctcaagcggctcaaggcccatccctggggc
gactacgcgacactgcagcaatcgcttccggatctatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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