KEGG   Luteimonas chenhongjianii: CNR27_06165
Entry
CNR27_06165       CDS       T05077                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lum  Luteimonas chenhongjianii
Pathway
lum03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNR27_06165 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lum03021]
    CNR27_06165 (rpoC)
   03400 DNA repair and recombination proteins [BR:lum03400]
    CNR27_06165 (rpoC)
Enzymes [BR:lum01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CNR27_06165 (rpoC)
Transcription machinery [BR:lum03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CNR27_06165 (rpoC)
DNA repair and recombination proteins [BR:lum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CNR27_06165 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ATD67078
UniProt: A0A290XDJ6
Position
1350146..1354420
AA seq 1424 aa
MKDLLNLFNQQRQIPDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPLERSQLLNEEQYMQMRQEHGDDFDAAM
GAEAVYDLLRTIDLQAEMIRLKEEIAATGSETKLKRLTKRIKLVEAFIESGNRPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENIPGEGMIFANIAEVRRAFDNK
AAGLHAKIKVRIQQTVIGEDGTREKVTSIVDTTVGRALLLEIMPDGLPFELANTELNKKN
ISRLINACYRRLGLKDTVVFADKLMYTGFGNATRAGVSIGINDMTIPTEKAGILVEAEAE
VLEIQQQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTMDGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVQRLEEAGVQSIQVRSTITCEAGFGVCANCY
GRDLGRGHLVNQGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGSIK
FNNLKHVKHESGNLVAVSRSGELSVLDGHGRERERYKLPYGATITVNDGDAIKAGQTVAN
WDPHNHPIVSEVAGFIRFVDFVDGITVIEKTDELTGLASREITDPKRRGSMGKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGDPVGVGDVVTKVPQEASKTRDITGGLP
RVADLFEARKPKDQAILAEISGIVSFGKDTKGKQRLIIKGLDGVDHEELIPKYRQIIVFE
GEHVEKGETVVDGEPGPQDILRLKGVEELASYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEITDAGDSKFLNGEQVERQRVLEDNVKLIARNELPAKFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHARRRRAASGLTESE
MDALSGGTVTELEAEAAAAPASPEQVMLEDAPVTPAADSDGEAR
NT seq 4275 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaatctcttcaaccagcagcgccagatcccggatttcgacgcgatc
aagatcgcgctcgcgagcccggacctgatccgttcgtggtcgttcggcgaagtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggtgtggtctgcgagaagtgcggcacggaagtcacgctggccaaggtgcgccgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgaagcgttcgtggtgaccgagccgggcctgaccccgctcgagcgcagccagctgctc
aacgaagagcagtacatgcagatgcgccaggagcacggcgacgacttcgacgccgcgatg
ggcgccgaggcggtctatgacctgctgcgcacgatcgacctgcaggccgagatgatccgg
ctcaaggaagagatcgccgcgaccggctcggaaaccaagctcaagcgtctgaccaagcgc
atcaagctggtcgaggccttcatcgagtcgggcaaccgccccgagtggatgatcatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgcccctggacggtggccgcttc
gcgacctcggatctcaacgatctatatcgccgcgtcatcaaccgcaacaaccgcctgcgt
cgcctgctcgagctcaacgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtcggtcgatgccctgatggacaacggccgccgtggccgtgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggaactgttcaagcccttc
atcttcgccaagctgcagcgccgtggcctggccacgacgatcaaggccgcaaagaagctg
gtcgagcgcgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgaacacccg
gtcatgctcaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccggtg
ctcatcgaaggcaaggccatccagctgcacccgctggtgtgtaccgccttcaacgccgac
ttcgacggtgaccagatggcggtccacgtgccgctgagcctggaagcccagctcgaagcg
cgtgcgctgatgatggcgtcgaacaacatcctctcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgtgcgctggagaacatc
ccgggcgagggcatgatcttcgccaacatcgccgaagtgcgccgcgcgttcgacaacaag
gccgccggcctgcacgccaagatcaaggtccgcatccagcagaccgtgatcggcgaggac
ggcacgcgcgagaaggtgacctcgatcgtcgacacgaccgtgggtcgcgccctgctgctc
gagatcatgcccgacggcctgccgttcgagctggccaacaccgagctcaacaagaagaac
atctcgcgcctgatcaacgcctgctaccgtcgcctgggcctgaaggacaccgtggtgttc
gccgacaagctgatgtacaccggcttcgggaacgcgacgcgcgcaggcgtgtcgatcggc
atcaacgacatgaccatcccgaccgagaaggccggcatcctggtcgaggccgaggccgag
gtgctggaaatccagcagcagtaccagtcgggtctggtcaccgcgggcgagcgctacaac
aaggtcgtcgacatctggtcgcgcacgaacgagcgcatcgccaaggcgatgatggacacc
atcggcaccgagaaggtcgtcaacgccaagggcgagacgatcgatcagaagtcgatgaac
tcgctctacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgaaacgccgatcatc
gcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctcaagacggcgaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtcgactgcggcaccatggacggcctc
accatgacgccgatcgtggaaggcggcgacgtcgtcgagccgctgcgtgaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgcccggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctcgacgagcagtgggtccagcgcctcgaagaggcgggcgtgcagtcg
atccaggtccgctcgacgatcacctgcgaagccggtttcggcgtctgcgcgaattgctac
ggtcgtgacctcggtcgcggccacctggtcaaccagggcgaggccgtgggtgtggtcgcg
gcgcagtcgatcggtgagcccggtacacagctcaccatgcgtacgttccacatcggtggc
gcagcgtcgcgtgctgccgccatcgacaacgtgacggtcaagaccaccggctcgatcaag
ttcaacaacctcaagcacgtcaagcacgaaagcggcaacctggtcgcggtgtcgcgctcg
ggcgaactgtcggtgctcgacggccacggccgcgagcgcgagcgctacaagctgccctac
ggcgcgaccatcaccgtcaatgacggcgacgcgatcaaggctggccagaccgttgcgaac
tgggatccccataaccacccgatcgtgtcggaagtggcgggcttcatccgcttcgtggac
ttcgtcgacggcatcaccgtcatcgagaagaccgacgaactgaccggcctggcgtcacgc
gagatcaccgatcccaagcgtcgtggttcgatgggcaaggacctgcgtccgatcgtccgc
atcgtcgatgccaagggcaacgacctgtcgatcccgggcaccgatctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgatcccgtcggcgtgggtgac
gtggtgaccaaggtgccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagcccaaggatcaggcgatcctcgccgagatc
tcgggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaagggc
cttgacggtgtcgaccacgaagagctgatccccaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgagcccggcccgcaggacatc
ctgcgcctgaagggcgtggaggaactggcgtcgtacctgacgaaggaaatccaggacgtc
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcaccgacgccggcgattcgaagttcctcaacggcgagcaggtc
gagcgccagcgcgtgctcgaggacaacgtcaagctcattgcgcgcaacgagctgccggcg
aagttcgatccggtcctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtgctcaccgaggcggccgtccgcggtacg
cgcgacagcctgcgcggtctcaaggagaacgtgatcgtcggtcgtctgattccggccggt
accggtctggcgtaccacgcccgtcgtcgtcgcgccgcctccggcctgacggagtcggaa
atggacgcgctttcgggcggcaccgtgaccgagctcgaagccgaggccgcggctgctccg
gcctcgccggagcaggtcatgcttgaagatgcaccggtgacgccggccgctgacagcgac
ggcgaagcacgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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