KEGG   Luteimonas yindakuii: E5843_06560
Entry
E5843_06560       CDS       T05957                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lus  Luteimonas yindakuii
Pathway
lus03030  DNA replication
lus03410  Base excision repair
lus03420  Nucleotide excision repair
lus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    E5843_06560 (ligA)
   03410 Base excision repair
    E5843_06560 (ligA)
   03420 Nucleotide excision repair
    E5843_06560 (ligA)
   03430 Mismatch repair
    E5843_06560 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lus03032]
    E5843_06560 (ligA)
   03400 DNA repair and recombination proteins [BR:lus03400]
    E5843_06560 (ligA)
Enzymes [BR:lus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     E5843_06560 (ligA)
DNA replication proteins [BR:lus03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     E5843_06560 (ligA)
DNA repair and recombination proteins [BR:lus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     E5843_06560 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     E5843_06560 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     E5843_06560 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      E5843_06560 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Bep_C_terminal zf-RRN7
Other DBs
NCBI-ProteinID: QCO67519
Position
1321688..1324189
AA seq 833 aa
MAKSPSERIDELRRLIEDANHRYYVLDDASIPDGEYDALMRDLEALEAAHPDLVTADSPT
RTVGTRPDAGFAEVRHAIPMLSLANAFEDPQGGDDDRIRYREVAEFERRIEERLGTRAPR
FSVEPKLDGLAISLRYEDGVFVQGATRGDGATGEDVTVNLRQVRAVPLRLRNTGAPPPAL
LEVRGEVYMPRREFEAWNARALERNERLLANPRNGAAGSLRQLDPAVTRRRPLAFFAYGI
GAVDGLELPETHSETLALLRGYGFPVAAEVDTATGFEGLITYYRRIGALRDALPYDIDGV
VYKLDRYDQQRTLGFVSRAPRWALAHKYPAQEQATQLRAIEIQIGRTGAATPVARLDPVQ
VAGVTVTNATLHNADQIARLDVREGDSVIVRRAGDVIPEIVRVIDERRPAGNVPWTMPEA
CPVCGSDLVREEGEAVFRCTGGLACAAQRREALRHFASRRALDIEGLGEKQADALVEYGF
VESLADLYALDVADLVRMKVAMDAATAADLLQLVDDSRGALSLDASTRAALAQEPPQWRR
AEFLRAHLAVDTGSGRVATKWAENLVAGIHASRRTTLPRFLFALGIPHLGETTAKTLATW
LGSLDFIRTTPALLLRALPDIGGEVARSIATFFEQPGNVAVVDALLAAGIVFEDEGAPDP
GLHERLDLAHLLSTLPVNKLGGKSAERLGQTYGTLAALLRANPSGWTGAGLSAAGAGNLQ
AYLADDDARAELFAAGEAMERLLAAAPVAMQQSTGPLDGKTVVLTGTLASMTRDEAGARL
EALGAKISGSVSKKTDFVVAGEAAGSKLARAEALGVEVWDEARLVAFLERGHE
NT seq 2502 nt   +upstreamnt  +downstreamnt
atggccaagtcccccagcgagcgcatcgacgaactccgacgcctgatcgaagacgcgaac
caccgctattacgtcctcgatgacgcgtcgattcctgacggcgaatacgacgccctcatg
cgcgacctggaggcactcgaggccgcgcacccggacctggtcaccgcggattccccgacc
cgcaccgtcggcacgcgacccgatgccggcttcgccgaggtccgccatgcgatcccgatg
ctgtcgctggcgaacgcgttcgaggatccccagggcggcgacgacgaccgcatccgctac
cgcgaggtcgccgaattcgaacgccgcatcgaggagcggctcggcacccgtgcaccgcgc
ttctcggtcgagcccaagctcgatggcctcgccatcagcctgcgctacgaggatggcgtg
ttcgtgcagggcgcgacccgcggcgatggcgcgaccggcgaggacgtgaccgtcaacctg
cgccaggtgcgcgcggtgccgttgcggctgcgcaacaccggcgcaccgccgccggcgctg
ctcgaggtgcgcggcgaggtgtacatgccgcgcagggaattcgaggcctggaacgcgcgc
gcgctggagcgcaacgagcgcctgctcgccaacccgcgcaacggcgcggccggatcgctg
cgccagctcgacccggcagtcacccggcgccggccgcttgcgttcttcgcctatggcatc
ggcgcggtggacgggctcgaactgcccgagacccactccgaaacactggcacttctgcgc
ggctatgggttcccggtcgcggcggaggtcgacaccgcaaccggcttcgagggcctgatc
acctactaccgccgcatcggcgcgctgcgtgacgcgctgccgtatgacatcgacggcgtc
gtctacaagctcgatcgctacgaccagcagcgcacgctgggcttcgtctcacgcgcgccg
cgctgggcgctggcgcacaagtacccggcacaggaacaggccacgcagctgcgcgccatc
gagatccagatcggtcgcaccggcgcggccacgccggtggcgcggctggacccggtgcag
gtggccggcgtcaccgtcaccaatgccacgctgcacaacgccgaccagatcgcacggctc
gacgtgcgcgaaggcgatagcgtgatcgtgcgccgcgccggcgacgtgatcccggaaatc
gtgcgcgtcatcgacgagcgtcgcccggccggaaacgtgccgtggacgatgcccgaagcc
tgtcccgtgtgcgggtcggacctcgtgcgcgaggagggcgaggcggtgttccgttgcacc
ggcggactcgcctgcgccgcgcagcggcgcgaagcgctccggcacttcgcctccaggcgc
gcgctcgacatcgaaggcctgggcgagaagcaggccgatgcgctggtggaatacggattc
gtcgaatcgctggccgacctctatgcgctcgatgtcgccgacctcgtacgcatgaaggtg
gcgatggacgcggcgaccgccgccgacctgctgcagctggtggacgacagccgcggtgcg
ctgtcgctcgacgcgtccacgcgcgcggcgctggcgcaggagccgccgcaatggcgacgc
gcggagttcctgcgcgcgcacctcgccgtggacacgggcagcggccgcgtggcgacgaag
tgggcggagaacctggtcgccggcatccacgccagccgtcgcaccacgctgccgcggttc
ctgttcgcgctgggcatcccgcatctgggagagaccacggcgaagacgctcgcgacatgg
ctgggttcgctggacttcatccgcaccacgccggcgctgctgctgcgggcgctgccggac
atcggtggcgaggtcgcgcgctcgatcgccacgttcttcgaacagccgggcaacgtcgcg
gtcgtcgatgcgctgctcgccgccggcatcgtgttcgaggacgagggcgcgcctgatccg
ggcctgcacgagcgcctggaccttgcgcacctgctgtcgacgcttccggtcaacaagctc
ggtggcaagagcgccgaacgcctgggccagacctacggcacgctggccgcgctgctgcgt
gcgaatccgagcggatggacgggtgctggcctgtcggcggcgggtgccggcaacctgcag
gcgtatctcgccgatgacgacgcgcgcgcggaactgttcgccgccggcgaggcgatggaa
cgcctgctcgcggcggcacccgtggcgatgcagcagagcaccgggccgctcgacggcaag
accgtggtgctgaccggcacgctggcgtcgatgacccgcgatgaagccggcgcgcgtctg
gaagcactgggcgcaaagatcagtggcagcgtgtcgaagaaaacggatttcgtggtggct
ggggaggcggcgggctcgaagctcgccagggccgaggcgctgggcgtcgaggtgtgggac
gaagcacggctggtggccttcctcgagcgcgggcatgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

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