KEGG T05957: E5843

Luteimonas yindakuii: E5843_10295

Entry

E5843_10295       CDS       T05957

Symbol

rlmD

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

lus Luteimonas yindakuii

Brite

KEGG Orthology (KO) [BR:lus00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lus03009]
    E5843_10295 (rlmD)
Enzymes [BR:lus01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     E5843_10295 (rlmD)
Ribosome biogenesis [BR:lus03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    E5843_10295 (rlmD)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 MTS Cons_hypoth95 Methyltr_RsmB-F PCMT Methyltransf_11 Met_10 TRAM Methyltransf_12 Methyltransf_23 Methyltransf_15 PrmA CMAS RrnaAD

Other DBs

NCBI-ProteinID:

QCU72656

Position

complement(2129465..2130892)

AA seq 475 aa
MGASALAGAAKADPGTFAGATPCGVCDNGALPPHHFRDVARLDQTPFQLDILDLGHDGRG
VARRADGKPVSVTGALPGERVLVRQTARSRSLDEAVTLDVERASPDRVQPRCPHFGVCSG
CVLQHLEESKQILAKQRVLLENFERIGHVVPEQVLPPLTDRQWGYRRKGRFSVRRVEKKG
RTLVGFRELDPRFVADLSICYTAIPAIGERVAALSALVDAMDGRREIPQIEFIAGDDTVA
LVFRHLAPLSPADRERLQAFAQDHGFAIFLQPGGIDSVHALWPGDPPLSFRLPQWDVELK
FRPLDFIQVNKGLNGKMIALALELLDTRPGERVLDLFCGLGNFTLPLARGNAEVIGVEGD
AGLVARARGNAALNGLANAEFHAADLTQPLDGKPWAGQGFDRLLLDPPRSGADAVLRQLS
LKGLKRIVYVSCHPGSLARDADYLVNERGWKLRAAGVMDMFPHTAHVESIALFEP

NT seq 1428 nt +upstreamnt +downstreamnt
atcggcgccagcgcgctcgcgggcgcagcgaaagccgaccccggcacgttcgccggggcg
acgccctgcggggtctgcgacaatggcgcgcttcccccgcaccatttccgcgacgtggct
cgactcgaccagaccccgttccagctcgacatcctcgacctcggccatgacggccgcggc
gttgcccgccgcgctgacggcaagcccgtgtccgtcaccggtgcgttgccgggcgaacgc
gtgctggtgcgccagacggcgcgctcgcgcagcctcgacgaggcggtcacgctggatgtc
gagcgcgcatcgcccgatcgcgtgcagccgcgctgcccgcatttcggcgtgtgcagcggc
tgtgtgctgcagcacctggaggagtcgaagcagatcctcgccaagcagcgcgtgctgctg
gagaacttcgaacgcatcggccacgtcgtgccggagcaggtgctgccgccgctgaccgac
cgccagtggggttaccgccgcaagggccggttctcggtgcgccgggtggagaaaaagggc
aggaccctggtcggcttccgcgagctcgacccgcgtttcgtcgccgacctgtcgatctgc
tacaccgcgatcccggccatcggcgagcgtgtcgcggcgctgtcggcactggtcgatgcg
atggacgggcgccgcgagatcccgcagatcgaattcatcgccggcgacgacaccgtggca
ctggtgttccgccatctcgcgccgctgtcgcccgccgaccgcgagcgcctgcaggccttc
gcgcaggaccacggcttcgcgatcttcctgcagcccggcggcatcgattcggtgcacgcg
ttgtggcccggggatccgccgctgtcgttccgcctgccgcagtgggatgtggagctgaag
ttccgaccgctcgacttcatccaggtcaacaagggcctcaacgggaagatgatcgcgctc
gctctggagctgctcgacacgcggccgggtgagcgcgtgctcgacctgttctgcgggctg
ggcaacttcaccctgccactcgcgcgaggcaacgcggaggtgatcggcgtcgagggtgat
gccggcctggtggcgcgtgcgcgcgggaacgccgcgctcaatggcctcgcgaatgcggaa
ttccatgccgccgatctcacccagcccctcgacggcaagccgtgggcgggtcagggcttc
gatcgcctgctgctggatccgccgcgctccggtgccgatgccgtgctcaggcaactgtcg
ttgaagggcctcaagcgcatcgtctatgtgagttgccatccgggctcgctggcacgcgat
gccgactatctcgtcaacgaacgcggctggaaactgcgtgcggcaggggtgatggacatg
ttcccgcataccgcgcacgtggaatccatcgcgctgttcgaaccctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (16)   
   Pfam (16)   
All databases (23)   

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