KEGG   Lutibacter profundi: Lupro_08540
Entry
Lupro_08540       CDS       T04235                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lut  Lutibacter profundi
Pathway
lut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lupro_08540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lut03019]
    Lupro_08540
   03016 Transfer RNA biogenesis [BR:lut03016]
    Lupro_08540
Enzymes [BR:lut01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Lupro_08540
Messenger RNA biogenesis [BR:lut03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Lupro_08540
Transfer RNA biogenesis [BR:lut03016]
 Prokaryotic type
  tRNA degradation factors
   Lupro_08540
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 Arylsulfotran_2
Other DBs
NCBI-ProteinID: AMC11298
UniProt: A0A0X8G771
Position
1925608..1927857
AA seq 749 aa
MSKRKNIYKKKGNIVKDLTQKILKLLNQTPSQSYNYKQISSKLALTDASARNQITQKLEA
LKAQQKIEEVERGKFKIIPNNKYFIGIIDATANGNAYFICDDLEHDIYIPARNLNKALNK
DTVKIYLYNRRNSKKQEGDVIEIIKRFKTEFVGVLQLNRNFGFVIPDDSKMYADIFVPQK
KLKGAQDGVKVLVEITDWPDKSKNPFGEIKEILGMPGDHNTEIHSILLEYGLPYKFPENV
EEEAAKIPLEITKNEIAKRRDMRKELTFTIDPKDAKDFDDALSFNILENGNYEIGIHIAD
VSHYVQENTILEEEAYNRATSVYLVDRVVPMLPETLSNGVCSLRPNEEKLTFSAVFEINE
KAQILNQWFGRTVTYSDKRFSYEEAQELIENNRVISSESKKSSILKCDVSSEISITGEAY
TVEKEIVSAILTLDKLAKKLRKKRLQQGAITFDRVEVKFILDDQAEPLGVYFKESKDANK
LIEEFMLLANKKVAEYVGVKKGVPTNNTFIYRVHDEPNLDKLEALQTIVSKFGYKNKIDT
KDKKSTSTSLNKLLQDVHGTGEANLIETLAIRSMSKAEYTTHNIGHYGLAFDYYSHFTSP
IRRYPDVMTHRLLHYYLEGGKSPKADIYEEKCKHSSEMEYLASKAERDSIKYMQVKYMEN
HKDQEFEGVISGVTEWGIYVEIIANKCEGMCRIREIKDDYYIYDEKQYALVGQSTKNVYQ
LGDHVLIKVKHTDLERKHLDFTLLEKINK
NT seq 2250 nt   +upstreamnt  +downstreamnt
atgtcaaaaagaaaaaatatatataaaaagaaaggaaatattgttaaagatttaactcaa
aaaattttaaaattgttaaatcaaacaccatctcaaagttataattacaaacaaatttct
tcaaagttagcattgactgatgccagtgcaagaaaccaaattacacaaaaattagaagcg
ttaaaggcacaacaaaaaattgaagaagttgaacgtggaaaatttaaaataattccaaat
aataaatattttattggaataattgatgctacagctaatggaaatgcctattttatttgt
gatgatttagagcatgatatttacatacctgcacgtaatttaaataaagcattaaataaa
gacaccgttaaaatatatttatacaatcgtagaaatagtaaaaaacaagaaggtgatgtt
attgaaattattaaacgttttaaaactgaatttgtaggtgttttacaattaaatagaaat
ttcggatttgttatacccgatgattcaaaaatgtatgcagatatttttgttcctcaaaaa
aaattaaaaggagcacaagatggagtgaaagtattggttgaaattactgattggcccgac
aaatctaaaaatccttttggtgaaataaaggaaattttaggtatgccaggtgaccataat
accgaaattcactctattttattagaatatggattaccttataaatttcctgaaaatgtt
gaagaagaagctgctaaaattccattagaaataacaaaaaatgaaattgcaaagcgtaga
gatatgcgaaaagaattaacatttactatagatcctaaagatgcgaaagattttgatgat
gcgttatcttttaacatattagaaaatggaaattatgaaataggaattcatattgccgat
gtttcacattatgtacaagaaaatactattttagaggaagaagcttataatagagcaaca
tctgtttatttagttgacagggttgtaccaatgcttccagaaacactatcaaacggtgta
tgttctcttcgaccaaatgaagaaaaattaacgttttcagcagtttttgaaataaatgaa
aaagcacaaattttaaatcaatggtttggtagaactgtgacatattccgataaaagattt
tcttatgaagaagctcaagaacttatagaaaataatagggttatttctagtgaatctaag
aaatcttccattttaaagtgcgatgtttcttcagaaatatcaattactggcgaagcatat
acagttgaaaaggaaattgtttcagcaattttaacactagataaattagcaaaaaaactt
aggaaaaagagattacaacaaggagctattacttttgatagagtagaggttaaatttatt
ttagatgaccaagctgaacctttaggagtttattttaaagaatctaaagatgctaataaa
ttaatagaagaatttatgttattagctaacaaaaaagtagctgaatatgttggtgttaaa
aaaggtgtaccaacaaataacacctttatttaccgtgttcatgatgaaccaaatttagat
aaattagaagcacttcaaaccattgttagcaaatttggatataaaaataaaattgacaca
aaagacaaaaaatcaacgtcaacttctttaaataaattattacaagatgtgcatggaaca
ggagaagcaaatttaatagaaacattagctattcgttctatgagtaaagctgaatatact
acacataatattggacattatggtttagcttttgattattacagtcatttcacttcacca
attagaagatatcctgatgttatgacacatagattacttcactattatttggaaggagga
aaatcaccaaaagctgatatttatgaagaaaaatgcaaacattcttcagaaatggaatat
ttagcttcaaaagcagagcgtgattccattaaatatatgcaagtaaaatatatggaaaat
cacaaagatcaagaatttgaaggtgttatttctggggttaccgaatggggtatatatgtt
gaaattattgcaaataaatgcgaaggaatgtgtagaattagagaaattaaagatgattat
tatatttatgatgaaaaacaatatgcattggtaggccaatcaactaaaaatgtatatcaa
ctaggagaccatgtattaataaaagtaaaacatacagatttagaaagaaaacatttagat
tttactttactggaaaaaattaataaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (90)   
   KEGG ORTHOLOGY (1)   
   RefGene (87)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (104)   

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