KEGG   Lipotes vexillifer (Yangtze River dolphin): 103072102
Entry
103072102         CDS       T03090                                 
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lve  Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03082  ATP-dependent chromatin remodeling
lve03250  Viral life cycle - HIV-1
lve04714  Thermogenesis
lve05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:lve00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103072102 (SMARCB1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    103072102 (SMARCB1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    103072102 (SMARCB1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    103072102 (SMARCB1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lve01009]
    103072102 (SMARCB1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lve03021]
    103072102 (SMARCB1)
   03036 Chromosome and associated proteins [BR:lve03036]
    103072102 (SMARCB1)
Protein phosphatases and associated proteins [BR:lve01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103072102 (SMARCB1)
Transcription machinery [BR:lve03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     103072102 (SMARCB1)
    SWI/SNF complex
     103072102 (SMARCB1)
Chromosome and associated proteins [BR:lve03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    103072102 (SMARCB1)
   PBAF complex
    103072102 (SMARCB1)
   SWI/SNF complex
    103072102 (SMARCB1)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 103072102
NCBI-ProteinID: XP_007451083
UniProt: A0A340WNI2
Position
Unknown
AA seq 385 aa
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgatgatgatggcgctgagcaagaccttcgggcagaagcctgtcaagttccagctggaa
gacgacggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacacgaccctggccaccagcgtaactctgttaaaagcctccgaggtggaagagattcta
gatggcaacgatgagaagtacaaggccgtatccatcagcacggaaccccccacctacctc
agggaacagaaggctaagaggaacagccagtgggtgcccaccctgcccaacagctcccac
cacctggacgccgtgccctgctccaccaccatcaacaggaaccgcatgggccgggacaag
aagaggacgttcccgctgtgctttgacgaccacgacccagctgtgatccatgagaacgcc
tcccagcccgaggtgctggttcccatccgactggacatggagatagacgggcagaagctg
cgggacgcctttacctggaacatgaacgagaagctgatgacccctgagatgttttcagaa
attctctgtgatgacctggatttgaacccactgacgttcgtaccagccatcgcctccgct
atcagacagcagatcgagtcctaccccacagacagcatcctggaggaccagtcagaccag
cgtgtcattatcaagctgaacatccacgtgggaaacatctccctggtggaccagtttgag
tgggacatgtcagagaaggagaactcgccggagaagtttgccctgaagctatgctccgag
ctggggctgggcggggagttcgtcaccaccatcgcatacagcatccggggacagctgagc
tggcatcagaagacctacgccttcagtgagaaccccctgcccacagtggagattgccatc
cggaacacaggcgacgctgaccagtggtgcccgctgctggagaccctcacagacgctgag
atggagaagaagatccgcgaccaggacaggaacacaaggcggatgaggcgtctggccaac
actgccccggcctggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system