KEGG   Lipotes vexillifer (Yangtze River dolphin): 103088623
Entry
103088623         CDS       T03090                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
lve  Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03015  mRNA surveillance pathway
lve03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lve00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103088623 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103088623 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lve03019]
    103088623 (PABPC4)
   03041 Spliceosome [BR:lve03041]
    103088623 (PABPC4)
Messenger RNA biogenesis [BR:lve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103088623 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     103088623 (PABPC4)
Spliceosome [BR:lve03041]
 Complex C
  Other components
   Complex C specific factors
    103088623 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 103088623
NCBI-ProteinID: XP_007453836
UniProt: A0A340WXQ9
Position
Unknown
AA seq 644 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttcg
gcttttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggctatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagctaaggaattcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagccagtttggtaagactctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaggagatgaatggaaaagaaatcagtgggaaagtc
attttcgtcggccgtgcacagaagaaagtggaacggcaggccgagttaaagcgaaaattt
gaacagctgaaacaggagagaattagtcggtatcagggggtgaacctctacattaagaac
ttggatgacaccattgatgatgaaaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaacggacgcatcgtgggctcc
aagccactgtatgtcgccctggcccagagaaaagaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtggccgggatgagagcgctccccgccaatgccatcttaaatcag
ttccagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttccc
acagctgtgcagagcctagcgcctcgtgccgctgttgctgctgctgctcctcgggctgtt
gcaccttacaaatacgcctccagtgtccgcagccctcaccccgccatccagcccctgcag
gcaccccagcctgcggtccatgtgcaggggcaggagccgctgaccgcctccatgctggcc
gcagcacccccacaggaacagaaacagatgctgggtgaacgtttgttcccgctcatccag
acaatgcactcaaacctggctgggaagattacggggatgctgctggagattgacaactcg
gagctgctgcacatgctggagtcccccgagtctctccgctccaaggtggatgaagctgtg
gcggtgctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgct
gctgctacctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (61)   

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