KEGG   Yoonia vestfoldensis: LOKVESSMR4R_00229
Entry
LOKVESSMR4R_00229 CDS       T04854                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lvs  Yoonia vestfoldensis
Pathway
lvs03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lvs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LOKVESSMR4R_00229 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lvs03021]
    LOKVESSMR4R_00229 (rpoC)
   03400 DNA repair and recombination proteins [BR:lvs03400]
    LOKVESSMR4R_00229 (rpoC)
Enzymes [BR:lvs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LOKVESSMR4R_00229 (rpoC)
Transcription machinery [BR:lvs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LOKVESSMR4R_00229 (rpoC)
DNA repair and recombination proteins [BR:lvs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LOKVESSMR4R_00229 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Peptidase_M23 RnfC_N RPOC_hybrid Phage_DsbA
Other DBs
NCBI-ProteinID: ART99570
UniProt: A0A1Y0E882
Position
228703..232941
AA seq 1412 aa
MNQELTNNPFNPVAPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLLTEEEFNDAQDLYGMDAFQ
ANIGAEAIREMLAQIDLESEAEQLRADLKVATGELKPKKIIKRLKIVENFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMREGMKGEGMSFSNIDEVEHAL
AAREVHLHAKITARMIQIDDEGNEVLERFETTPGRLRLGALLPLNAKAPFALVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVVPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKANDKVTEAMMTTISTAGRDADGSESEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRQVDCGTDRAITAEAAVNDGEVVSSLAERVLGRV
SADDVLKPGTDEVIVHAGELIDERKADMIDAAAIGKMRIRSPLTCEAEDGVCAMCYGRDL
ARGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQPGKVTFRNAM
LLENAAGENVVMGRNMVIAIVGPEGEDRATHKVGYGSKVLVKEGQEILRGDKIFEWDPYT
LPIIAEKSGTAKYVDLINGIAMREDTDDATGMTQRIVSDWRAAPKGNELAPKIIVVGADG
EVVLKDDGNPVSYGMSVDAVLSVEDGQEVKAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESADDPDLKVEYMVPKGKHIPVVEGDFVQ
KGDYIMDGNPAPHDILAVMGVEALAVYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGDTVLLKGETVDKAEFDEANAKALKRGDRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLIGLKENVIVGRLIPAGTGGATQQMRKIAADRDNVVIEARRE
EAEQAAALVAPVRNEETDVFGARSEASDDNDA
NT seq 4239 nt   +upstreamnt  +downstreamnt
atgaaccaggaactgacaaacaacccgttcaacccggttgccccggcgaagacgtttgac
gaaatcaaggtgtctctggcatcgcccgaacggatcctgtcgtggtcctttggcgagatc
aagaagcccgagaccatcaactaccgcacgttcaagcctgaacgggacggtctgttctgc
gcgcggatctttggcccgatcaaggattacgaatgcctctgcggcaaatacaagcgcatg
aaatatcgcggcgtcgtctgcgaaaaatgcggcgtggaagtgaccctgcaaaaggtccgc
cgcgaacgcatgggccatatcgaactggccgcacctgttgcgcatatctggttcctgaaa
tcgctgccaagccgcatcggcctgatgctggatatgacgttgcgcgatctggaacggatt
ctgtatttcgaaaactacgtcgtgatcgaacccggcctgacggacctgacctatggccag
ctgctgaccgaggaagaattcaacgacgcgcaggacctttatggcatggacgcgtttcag
gccaatatcggcgccgaagcgatccgcgaaatgctggcccagatcgatctggaatccgag
gctgaacagctgcgcgccgatctgaaagtggcgacaggtgaactcaagcccaagaagatc
atcaagcgcctgaagatcgtcgagaacttccttgaatctggcaatcgcccggaatggatg
gttctgaccgtgatccccgtgatcccgccggaactgcgcccgctggtcccgctggatggc
ggccgttttgcgacctctgacctgaacgatctttatcgtcgtgtcatcaaccgcaacaac
cgcctgaagcgcctgatcgaactgcgcgcgcctgatatcattgtgcgcaacgaaaagcgc
atgctgcaggaatccgtcgatgctttgttcgacaacggccgtcgtggccgcgtgatcacg
ggtgccaacaagcgtccgctgaaatcgctgtccgatatgctcaagggcaagcagggtcgt
ttccgccagaaccttttgggcaagcgcgtcgacttttcgggccgttcggtcatcgtgacc
gggccagagctgaagctgcaccaatgcgggttgcccaagaagatggcgctcgaattgttc
aaaccgttcatctattcgcggctggaggccaaaggcctgtccagcaccgtgaaacaggcc
aagaaactggtcgaaaaagaacggccagaggtttgggatatcctggatgaagtcatccgc
gaacatcccgtcatgctgaaccgggcgcccacgctgcaccgtctgggcattcaggcgttc
gaaccggtcctgattgaaggcaaggcgatccagctgcacccgctggtctgtactgctttc
aacgccgactttgacggcgaccagatggctgtgcatgtgcccctgagtctcgaggcgcag
ctggaagcccgcgtgctgatgatgtccacgaataacgtgttgtcgcctgccaacggcgcg
ccgatcatcgtgccatcgcaggatatgatccttggcctttattacacgaccatcatgcgc
gaaggcatgaagggcgaaggcatgtcgttcagcaatatcgacgaggttgaacatgcgctt
gctgcgcgtgaagtgcatctgcacgccaagatcaccgcgcggatgatccagatcgacgac
gaaggcaacgaagtgctggaacggttcgagacaacaccgggccgtctgcgtctgggtgcc
ttgttgccgctgaacgccaaggcgcctttcgcgctggtcaaccgcctgttgcgcaagaaa
gaggtgcagcagatcatcgacaccgtctaccgctattgcggccagaaggaatcggtcatc
ttctgcgaccagatcatgaccatgggcttccgcgaggcgttcaaggcgggcatttccttc
ggcaaggacgacatggtcgtgccggataccaaatggacgctggtcgatgaaacccgcgat
caggtcaaggatttcgaacagcagtacatggacggtctgatcacccagggtgaaaagtac
aacaaggtcgtcgatgcctggtcgaaagccaacgataaggtcaccgaggcgatgatgacc
accatttccaccgccggccgtgatgccgatggatcggaaagcgagccgaactcggtctat
atgatggcccattccggtgcgcgtggctcggtcacgcagatgaaacagctgggcgggatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatatttcaactcgacccacggtgcccgcaagggtctg
tcggataccgcgttgaagacagcgaactcggggtatctgacgcgtcgtctggtggatgtc
gcacaggattgcatcgtccgtcaggtcgattgcggcactgaccgtgcgatcaccgccgaa
gcggccgtgaatgacggtgaggtcgtgtcctcgctggccgaacgtgtgctgggccgtgtg
tccgccgatgacgtgctgaagcccggcaccgacgaggtgatcgtccacgcaggcgagctg
atcgacgaacgcaaggccgatatgatcgacgccgctgccatcggcaagatgcgcatccgt
agcccgctgacctgcgaggccgaggatggcgtttgtgccatgtgctatggccgtgatctg
gcgcgcggtacccgcgtgaacatcggtgaagcggtcggcatcatcgccgcccagtccatc
ggtgaacccggcacccagctgacgatgcggaccttccacatcggcggcgtcgcacagggt
gggcagcagtccttcctcgaagcatcgcagcccggcaaggttactttccgcaatgccatg
ttgctggaaaatgccgctggtgaaaacgtcgtcatgggccggaacatggtcatcgcgatc
gttggacccgaaggcgaggatcgcgcgacccataaggtcggttacggttccaaagtcttg
gtcaaggaaggccaagagatcctgcgcggcgacaagatctttgaatgggatccttatacc
ctgccgatcatcgctgaaaaatcgggaacggcgaaatatgtcgatctgatcaacgggatc
gccatgcgcgaagacaccgatgatgcaacgggcatgacccagcgcatcgtgtccgactgg
cgcgctgcccccaagggcaacgagctggcgccgaagatcatcgtcgtcggtgcggatggt
gaagtcgtgctcaaggatgacggcaaccccgtatcctatggcatgtcggttgatgccgtc
ctgtccgtcgaagacggccaagaggtaaaagccggtgacgtgatcgcccgtatcccgcgc
gaaggtgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaattgttcgaa
gcccgtcgtcccaaggatcacgcgatcatcgccgaaatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgcatcgcgattgaaagcgccgatgatccggatctgaag
gtcgaatacatggtgcccaagggcaagcacattcccgtcgtggaaggtgactttgtccag
aagggtgattacatcatggatggcaacccagccccgcatgatattcttgcggtcatgggg
gtcgaggccctggcagtctatatgatcgacgaagtgcaggacgtgtatcgtctgcagggc
gtcaagatcaacgacaagcacatcgaagtcatcgtgcgccagatgctgcagaaatgggaa
atccaggacagcggcgatacggttctgctgaaaggcgaaaccgtggataaggctgaattc
gacgaagccaatgccaaggcgctcaagcgcggcgaccgtccggcaacgggcgagccgatc
ctgctgggcatcaccaaggcatccttgcagacacggtccttcatctcggcggcctcgttc
caggaaaccacgcgcgtgctgaccgaagcatcggtgcagggcaagcgggacaagctgatc
ggcctgaaggaaaacgtcatcgtcggccgtctgatcccggcaggcacaggcggggcgacc
cagcagatgcgcaagatcgccgccgaccgcgacaatgtcgtgatcgaggcgcgccgcgaa
gaggccgaacaggccgcagcgctggtcgcaccggtgcgcaacgaggaaaccgatgttttc
ggtgcccgcagcgaagcgtccgacgacaacgacgcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (46)   

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