KEGG   Yoonia vestfoldensis: LOKVESSMR4R_01334
Entry
LOKVESSMR4R_01334 CDS       T04854                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
lvs  Yoonia vestfoldensis
Pathway
lvs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lvs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOKVESSMR4R_01334 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lvs03019]
    LOKVESSMR4R_01334 (rne)
   03009 Ribosome biogenesis [BR:lvs03009]
    LOKVESSMR4R_01334 (rne)
Enzymes [BR:lvs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     LOKVESSMR4R_01334 (rne)
Messenger RNA biogenesis [BR:lvs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LOKVESSMR4R_01334 (rne)
Ribosome biogenesis [BR:lvs03009]
 Prokaryotic type
  rRNA processing factors
   LOKVESSMR4R_01334 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ARU00655
UniProt: A0A1Y0EAK8
Position
1352139..1354745
AA seq 868 aa
MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPIADREALMEEERAYAESLKAEEEAEDAPKQPRRRTRSK
VRAAAVDSADAVVTSGDDPAGLETIDLAEDLEGSSPMELVGETPVETPAADDDSDEAAPD
ETIESVADADDIDDMRPVRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSL
AGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAGEMTVPDGAGLIIRTAGSQRTKAEIK
RDYEYLQRMWEQIRALTLQSIAPAKIYEEGDLIKRSIRDLYSKDIDEVIVAGEAGYRSAK
DFMRMIMPSHAKNVKFYAEPMPIYARYQVETYLAGMFNPTVQLPSGGYIVIGITEALVAI
DVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKR
FKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQMCPHCHGTGLLRSDDNVALS
ILRQLEEEGVRARSKEVLVRAPIAIANFLMNGKRENIAEIEARYGMSVRIECDPTLISPD
FVVEKFKTATRIVPEAAPIVANALLMEEDDDDDLIPETPDEDEEASAAASPAPEADGEDR
PKRKRRRRRRRRGAGDAAQADGTETPETGEEAAADDAPGASEPAPEAAPEDKPKRRRTRA
RKAADHAPEQPADAAAAPEAPLAQDAPAPAEVTAEEAAPKKRTRSRKKPSVVQETAAEPA
AAAESAAEPAADAAPEEAPAKPKRRSRAKPKPAEAEAAAEPVKEAPVAATPEPAATPEPA
PAPQPEPEPAAAPAAEKPRRKGWWSLGK
NT seq 2607 nt   +upstreamnt  +downstreamnt
atgccaaagaaaatgcttatcgatgccacccatgcggaagaaacccgcgtcgtggtggtg
gacggcaacaaggtcgaagaatttgattttgaaagccaattcaaacgccagctggcgggc
aatatctaccttgccaaggtaacacgggtcgaaccatcgctacaggccgctttcgtcgat
tacggcggaaaccggcatgggttcctggccttcgcggaaatccatcccgattattaccag
atccccatcgccgaccgcgaggcgctgatggaagaagaacgcgcctatgccgaaagcctc
aaggccgaggaagaggccgaggatgcgcccaaacagccccgccgccgcacccgcagcaag
gtgcgcgcggccgcggtagacagcgccgatgcggtcgtgacctcgggcgatgatccggca
ggtctggaaaccatcgatctggccgaggatcttgaaggcagctcgccgatggaattggtc
ggtgaaacgccggtcgaaacccccgccgccgatgatgacagcgatgaggccgcgcccgat
gagaccatcgaaagcgtcgctgatgccgatgatatcgacgacatgcgcccggtgcgcaaa
ccgcgcccgcgtcgctataagatccaagaggtcatcaaggtccgccagatcctgctgatc
caggtggtcaaggaagaacgcggcaacaagggtgcggcgctgacgacctatctgtcgctg
gcaggccgctattgcgtcttgatgcccaataccgcgcgcggcggcgggatttcgcgcaag
atcaccaatgccgtggaccgcaagaagctgaaagaaatcgccggcgaaatgaccgtgccc
gatggcgcggggctgatcatccgcaccgccggatcgcagcgcaccaaggcggaaatcaag
cgcgattacgaatatctgcaacggatgtgggaacagatccgcgccttgacgctgcaatcc
atcgcgcctgcgaaaatctacgaagaaggcgatttgatcaaacgctcgatccgcgacctg
tattccaaggatatcgacgaggtgatcgtcgcgggcgaggcgggctatcgctcggccaag
gatttcatgcggatgatcatgccgtcgcatgcgaaaaacgtgaaattctacgccgaaccg
atgccgatctatgcgcgctatcaggtggaaacctatcttgcgggcatgttcaatcccacg
gtgcagctgccctcgggcggctatatcgtgatcggcatcaccgaggcgctggtcgccatc
gacgtgaactctggccgcgcgaccaaggaaggctcgatcgaacagaccgcgctgaaaacc
aatctcgaagccgccgatgaggtcgcgcgccagctgcgcctgcgcgatctggccggtctg
atcgtgatcgatttcatcgacatggacgaacgcaagaataacgccgccgtcgaaaaacgc
ttcaaggacaagctgaaaaccgaccgcgcgcggattcaggtgggccggatttccggtttc
ggcctgatggaaatgtcgcgccagcgcctgcgccccggcatgctcgaggccacgacacag
atgtgcccgcattgccatggcacgggcctgctgcggtccgacgacaatgtcgcgctgtcg
atcctgcgccagctcgaagaagaaggcgtgcgcgcgcgctccaaagaggtgctggtccgc
gcccccatcgcgattgccaatttcctgatgaacggcaagcgcgaaaacatcgccgagatc
gaggcgcgctatggcatgtcggtgcggatcgaatgtgacccgacgctgatctcgcccgat
ttcgtggtggaaaagttcaagactgcgacccgcatcgtccccgaagccgcccccatcgtc
gccaatgcgctgctgatggaagaggatgatgatgacgatctgatccccgaaacccccgat
gaagacgaagaggccagcgccgctgcgtccccagcgcccgaggcggatggcgaagaccgg
cccaagcgcaagcgccgtcgtcgtcggcggcggcggggtgcgggtgatgccgcacaggcc
gatggcacagagacgcccgagaccggcgaagaggccgcggctgacgacgcccccggcgca
tccgaacccgcgcccgaagcggcccccgaggacaagcccaagcgccgccgcacgcgcgcc
cgcaaagcggcggatcatgcgcccgaacagcctgccgatgccgcagcagcacccgaggca
ccgctggcccaagacgcgcccgcgcccgcagaggtcaccgccgaagaggccgcgcccaag
aaacggacccgcagccgcaaaaagccgagcgtcgtgcaagagactgccgccgaacccgca
gccgcagccgaatctgccgccgaacccgctgccgatgccgcgcccgaagaggcccccgcc
aagcccaagcggcgcagccgcgccaagccgaaaccggccgaggcagaggccgcagcagag
ccagtcaaagaggcgcctgtcgcggccacaccagaaccggcagcgacgccggaaccagcc
cctgcgccgcagccagagccggaaccggccgcagcgcccgccgccgaaaaaccgcgccgc
aaaggctggtggtcgctcggtaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (54)   

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