KEGG   Yoonia vestfoldensis: LOKVESSMR4R_02610
Entry
LOKVESSMR4R_02610 CDS       T04854                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
lvs  Yoonia vestfoldensis
Pathway
lvs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lvs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    LOKVESSMR4R_02610 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lvs03400]
    LOKVESSMR4R_02610 (sbcB)
Enzymes [BR:lvs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     LOKVESSMR4R_02610 (sbcB)
DNA repair and recombination proteins [BR:lvs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     LOKVESSMR4R_02610 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LOKVESSMR4R_02610 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LOKVESSMR4R_02610 (sbcB)
SSDB
Motif
Pfam: RNase_T Exonuc_X-T_C
Other DBs
NCBI-ProteinID: ARU01912
UniProt: A0A1Y0EF57
Position
complement(2593988..2595367)
AA seq 459 aa
MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRV
TPDQLTDPSLPSLFEFSQQVAEFTQRWAPAIWVGYNTIKFDEEVLRQTFYQNLLPNIYAT
QFNGNTRFDILPAVYAAYARHPDLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV
EATIHIARLIATRSPALWSELIDNAHKASVQAKLESFQPYELVTRFGGGEPRSYVGCFCG
YSHGNSAQAAFFDLDAADPADFLEASDAAIFAAVDGTPKIIRGVSTNKAPALLGPAAPSA
EYLRRAEVIANAPEFRQRVGAAMAARFVEDPDAPPKSVERQIYGEFYSNADKQLLQEFQH
AAWPRRQEIAASLSDPRLRQLGRRLVAFYSPELLTSDEMALFKVYLRDKWSAPDVPETEW
MTFEKAEAALRDLRAADAVEHRDLDAIALFIRARFEGDA
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggattttgtcttttacgatcttgaaaccacggggatctctcccgagttcgaccagccg
ctgcagttcgccgcgatctggacggatgagaatttcgtggaaaaggaccgggtcaacatc
cgctgccggttggcgccccatattttgccttcaccgcaggcgttggttgttactcgcgtt
acgcctgatcagctgacagacccaagcctgccatcgctgtttgagttctcgcagcaggtg
gctgagttcacgcagcgatgggcgcctgcaatctgggtgggctacaacacgataaagttc
gacgaggaagtgctgcggcagaccttctaccagaatctgttaccgaacatttacgccacg
cagttcaatggcaacacgcgctttgacattctgcctgcagtctatgccgcttatgcccga
cacccggacctactcgtctggcccaccgatgacactggccggcggagcttcaagctagat
cggctggcgcctgcaaatggcttcaatgcccacaacgcgcatgatgccctgggggacgtt
gaggcgaccatccacatcgcacgtctgatcgcaacgcgtagcccagcgctttggtccgag
ttgatcgacaacgcccacaaggcgagtgtgcaggcaaaacttgaaagcttccagccctac
gagctggtcacgcgctttggcggtggtgagccgcgttcctacgtgggctgtttctgcgga
tactctcacggcaacagcgcgcaggccgcgtttttcgatctggatgccgcagacccagcc
gattttctcgaagcttcggatgcagcgatctttgcggcagtagacggcaccccgaagatc
attaggggcgtgtccacaaataaggcacccgcgctcctcggacccgcagcgcccagcgca
gagtatcttcgccgcgccgaggtcatcgccaatgcgcctgagtttcgtcagcgtgtaggc
gctgcgatggcggcacgcttcgtcgaagatcccgatgccccgcccaagtcggttgagcga
cagatttatggggaattctattccaatgctgacaaacaactcttgcaggagtttcagcat
gcggcctggccgcgtcggcaagaaatcgccgcaagcctttcagatcctaggttgcgtcag
ctcggtcggcggttggtggcgttttacagccctgagctgctgacatcagatgagatggcg
cttttcaaagtctatctgcgtgataagtggtcggcgcctgacgtacctgaaaccgaatgg
atgaccttcgaaaaagcggaagcagcactacgtgatttgcgtgctgccgatgctgtagag
caccgcgatcttgacgcgattgcgttatttataagggcacggttcgaaggtgatgcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (44)   

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