KEGG   Lysobacter sp. TY2-98: DWG18_09865
Entry
DWG18_09865       CDS       T05586                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lyt  Lysobacter sp. TY2-98
Pathway
lyt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lyt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DWG18_09865 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lyt03021]
    DWG18_09865 (rpoB)
   03400 DNA repair and recombination proteins [BR:lyt03400]
    DWG18_09865 (rpoB)
Enzymes [BR:lyt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DWG18_09865 (rpoB)
Transcription machinery [BR:lyt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DWG18_09865 (rpoB)
DNA repair and recombination proteins [BR:lyt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DWG18_09865 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DOCK-C2
Other DBs
NCBI-ProteinID: AXK72551
UniProt: A0A345ZLC6
Position
complement(2033537..2037688)
AA seq 1383 aa
MTTYSFTEKKRIRKDFGKRRAILEVPFLLAIQVDSYREFLQEHTDPAKREDKGLHAALKS
VFPIASYSGNAALEYVGYKLGEPAFDERECRTRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDAVFCRIDRRRKLPVTILLRALGYNNEEMLKSFFDINTFHIQPE
GVQLELVPERLRGETLDFDLADGDKVIVEAGRRVTARHVRQLEQAGISALAVPDSYLAGR
ILSHDVVDPKTGELLANANEELNDAHLEAFRKAGIAQVGTLWVNDLDRGPYISNTLRIDP
TKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSGVGRMKFNRRLGRKETE
GAAVLYDAKYFQDRKDEESARLRGIYAQTSDILDVIRVLTEIRNGRGVVDDIDHLGNRRV
RSVGEMAENTFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQ
FMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLIN
SLAVFARTNRYGFLETPYRRVVDGKVTEEIEFLSAIEENEYVIAQANAPQDEKGTMTAQF
VACRYQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTL
RAQKPLVGTGIERAVARDSGVTVNARRGGVIEAIDAARIVVKVNEGEVNEGLDAGVDIYN
LVKYTRSNQNTCINQRPLVKVGDRIERGDVLADGPSTDIGELALGQNMLVAFMPWNGYNF
EDSILLSERVVEEDRYTTIHIEELTVQARDTKLGPEEITADIPNVSEQALGRLDESGVVY
IGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGVVIDVQ
VFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLRGQLLGKVANGGAGLKK
GDTVTSLVLDSLSKKDWFTLRMKDDDAVEAIERAQKQIDEYQKEFERRFADKRGKITQGD
DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYSADGTTVDIVLNP
LGVPSRMNIGQILEVHLGWAAKGLGKKIDRMLQAQAAVSDLRKFLGEIYNHDTGVVGERV
DLSQFSDEELIRLAKNLTDGVPMATPVFDGAAETEIKKMLELAELPLSGQTVLHDGRTGE
AFERPVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDYEMVAGMPESFNVLVREIRSLAINMEL
EEH
NT seq 4152 nt   +upstreamnt  +downstreamnt
atgacgacgtactcgttcaccgagaaaaagcgcatccgcaaggatttcggcaagcgccgc
gcgatcctcgaagtgcccttcctgcttgcgatccaggtcgactcgtaccgcgagttcctg
caggagcacaccgaccccgccaagcgtgaggacaagggcctgcacgccgcgctcaagtcg
gtcttcccgatcgcgagctacagcggcaatgccgcactcgaatacgtcggctacaagctc
ggcgagcccgcgttcgacgagcgcgagtgccgcacgcgtggcatgagctacggcgcgccg
ctccgggtgaccgttcgcctggtgatctacgaccgcgagtcgtcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctacatgggcgagatcccgctcatgaccgaaaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaccacgaccgtggcaagacgcacagctcgggcaagctgctgtacagcgcgcga
atcattccttaccgcggttcgtggctggacttcgagttcgaccccaaggacgcggtgttc
tgccgcatcgaccgtcgccgcaagctgccggtgacgatcctgctgcgcgcgctcggctac
aacaacgaagagatgttgaagtcgttcttcgacatcaacacgttccacatccagccggaa
ggcgtgcagctcgagctcgtgccggagcgtctgcgcggtgaaacgctggacttcgacctg
gccgacggtgacaaggtcatcgtggaagccggtcgtcgcgtgaccgcgcgtcacgtgcgc
cagctcgagcaggccggtatctccgcactcgccgtgccggacagctacctcgccggtcgc
atcctgtcgcacgacgtcgtcgatccgaagacgggcgagctgctcgcgaacgcgaacgaa
gagctcaacgacgcgcacctcgaagcgttccgcaaggcgggcatcgcgcaggtcggcacg
ctgtgggtcaacgacctcgaccgcggtccgtacatctcgaacacgctgcgcatcgatccg
accaagacgcagctcgaagcgctggtcgagatctaccgcatgatgcgtccgggtgagccg
ccgacgaaggacgccgcgcagaacctattccacaacctgttcttcacgttcgagcgctac
gacctgtcgggcgtgggtcgcatgaagttcaaccgtcgcctcggccgcaaggaaaccgaa
ggcgcggcggtgctgtacgacgccaagtacttccaggatcgcaaggacgaagagtccgca
cgcctgcgcggcatctacgcgcagacgtccgacatcctcgacgtcatccgcgtgctgacg
gaaatccgcaacggtcgcggcgtggtcgacgacatcgaccacctcggcaaccgtcgcgtg
cgttcggtcggtgaaatggcggagaacaccttccgcgtcggcctcgtgcgcgtcgagcgt
gcggtcaaggagcgcctgtcgatggcggagtccgaaggcctcacgccgcaggaactcatc
aacgccaagcccgtcgcggccgcgatcaaggagttcttcggctcctcgcagctgtcgcag
ttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgcgtgtcggccctc
ggcccgggcggtctgacgcgtgagcgtgccggcttcgaagtgcgcgacgtgcacccgacg
cactacggtcgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatcaac
tcgctcgccgtgttcgcacgtacgaaccgctatggcttcctcgagacgccgtaccgccgt
gtcgtcgacggcaaggtgaccgaagagatcgagttcctttcggcgatcgaagagaacgag
tacgtcatcgcccaggccaacgcgccgcaggacgagaagggcacgatgacggcgcagttc
gtcgcctgccgttaccagggcgaatcgctgctcaagccgccgagcgaagtccacttcatg
gacgtctcgccgatgcagaccgtgtcggtcgcggccgcgctcgtgccgttcctcgagcac
gacgacgcgaaccgcgcactcatgggcgcgaacatgcagcgccaggcggtgccgacgctg
cgtgcgcagaagccgctggtgggcacgggcatcgagcgcgccgtggcacgcgactcgggc
gtgaccgtgaatgcgcgccgcggtggcgtgatcgaagcgatcgacgccgcgcgcatcgtc
gtcaaggtcaacgaaggtgaagtcaacgaaggcctcgacgccggcgtcgacatctacaac
ctcgtcaagtacacgcgttcgaaccagaacacctgcatcaaccagcgtccgctggtgaag
gtcggtgatcgcatcgagcgcggcgacgtgctggccgacggtccgtcgaccgacatcggc
gagctcgcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctcagcgagcgcgtcgtcgaagaagatcgctacacgacgatccac
atcgaagaactgaccgtccaggcgcgcgacaccaagctcggaccggaggaaatcaccgcc
gacatcccgaacgtgtccgagcaggcgctcggccgtctcgacgagtcgggcgtggtctac
atcggtgcggaagtgcgcgcgggcgacatcctcgtcggcaaggtcacgccgaagggcgag
agccagctgacgccggaagagaagctgctccgcgcgatcttcggcgagaaggcgtccgac
gttaaggacagctcgctgcgcgtgccgccgggcatggacggcgtcgtcatcgacgtgcag
gtcttcacccgcgacggcatcgagaaggacaagcgcgcgcgtcagatcgaagagagcgaa
atccgtcgggtcaagaaggacttcgacgaccagttccgcatcctcgaggcggcgatctac
gaccgtctgcgtggccagctgctcggcaaggtggcgaacggcggtgccggcctcaagaag
ggcgacacggtcacgtcgctggtgctcgacagcctgtccaagaaggactggttcacgttg
cgcatgaaggacgacgacgcggtcgaggcgatcgagcgcgcgcagaagcagatcgacgaa
taccagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcacccagggcgac
gacctcgcgccgggcgtgctcaagatggtcaaggtcttcctcgccgttaagcgccgcatc
cagccgggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcgacgatcgtt
ccggtcgaagacatgccgtacagcgccgacggcaccaccgtcgacatcgtgctgaacccg
ctgggcgttccgtcgcgaatgaacatcggccagatcctcgaagtccaccttggttgggcg
gcgaagggcttgggcaagaagatcgatcgcatgctgcaggcgcaggccgcggtgtcggat
ctgcgcaagttcctcggtgagatctacaaccacgacaccggcgtggtcggtgagcgcgtc
gacctgtcgcagttctccgacgaggagctgattcgcctcgccaagaacctgaccgacggc
gtgccgatggcgacgccggtgttcgacggcgcggccgagaccgagatcaagaagatgctc
gagctcgccgagctgccgctgagcggccagaccgtgctgcacgacggtcgtaccggcgaa
gcgttcgaacgtccggtcaccgtcggctacatgcacatgctgaagctgaaccacctggtc
gacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacccagcagccgctg
ggcggcaaggcgcagttcggcggtcagcgtttcggcgagatggaagtctgggcgctggaa
gcgtacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtgcag
ggccgcaaccagatgtacaagaacatcgtcgacggcgactacgagatggtcgcgggcatg
ccggagtccttcaacgttctcgtgagggaaatccgctcgctggcgatcaacatggagctt
gaggagcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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