KEGG T01922: HP15

Marinobacter adhaerens: HP15_1882

Entry

HP15_1882         CDS       T01922

Symbol

rnd

Name

(GenBank) ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

mad Marinobacter adhaerens

Brite

KEGG Orthology (KO) [BR:mad00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mad03016]
    HP15_1882 (rnd)
Enzymes [BR:mad01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     HP15_1882 (rnd)
Transfer RNA biogenesis [BR:mad03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    HP15_1882 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 HRDC RNAseD_HRDC_C Helicase_Sgs1 HTH_IclR

Other DBs

NCBI-ProteinID:

ADP97646

UniProt:

E4PPF9

Position

complement(1986276..1987433)

AA seq 385 aa
MDISAQAAVAVDVPPAPTRIDWIREPQALDKWLDRAPGKPLALDTEFERVNTFYPIPGLV
QLGLDGEFCLVDPSVAEQSGRFREVLADPDTPKLLYAMSEDLELFRQWLNLQPAGVIDLQ
IGAAMAGAGFSLGYARLVETLFGETLDKSATRSDWLARPLSDAQQRYAIDDIRFLEPMYH
WVSALLRDRGLEAALVEESARFANELAGQEDPDNHYLKLRAGWTLSAQQQGVLKELVRWR
ERECQRRDRPRNRVLADALLIAIAERLPASVKELSNIQGVPSGAVRRYGDTLIELVSRGS
TADNSSLERIAPPLSRDQQGFFKQLKRLFRNAAEDADIPMELLAPRKRLEKVVQQPDLAQ
HDFFQGWRAQILAPVRADIEELLKS

NT seq 1158 nt +upstreamnt +downstreamnt
atggatatttccgcccaggccgctgtggcagttgacgttcccccggctccgaccaggatt
gactggatccgggaaccacaagcactggacaaatggctggatcgggcaccgggcaagccc
ctggcgctggacaccgaatttgagcgggtaaacaccttttacccgataccggggttggtt
cagttgggcctcgacggcgagttttgcctggtggacccttccgttgccgagcagtccgga
cgatttcgggaagtcctggcggacccggacactccaaagcttctttacgccatgagcgaa
gatctggaactttttcgccagtggctgaatcttcaacctgccggtgtcattgatcttcaa
atcggggccgcaatggccggagcagggttctccctgggttacgcgaggctggtggaaacc
ctgttcggtgagactctggacaagtccgccacccgctctgactggctggcgagaccgctg
agcgatgctcagcaacgctacgcgattgacgatatccgttttctggagccgatgtaccat
tgggtcagtgcattacttcgcgatcgcggtctggaagcggctctggttgaggaatcggcg
cgctttgccaatgaactggcagggcaggaggatcccgacaaccattacctgaaactgcgg
gccggatggaccctctcggctcagcaacagggtgttctcaaggaactggtgcgctggcgt
gagcgggagtgccagcggcgggaccggccaaggaaccgtgtgctggcagatgcactgttg
attgccatcgcggaaaggctgccggcgtccgtgaaggaactttccaacattcagggagta
ccatccggcgcagtccgtcggtacggcgataccctgattgaacttgttagccggggatcg
accgcggataattcgtcccttgagaggattgcgccaccgttgtcccgggatcagcaggga
ttctttaaacagttaaagcgtcttttcaggaatgcggcagaagatgctgatattccaatg
gaattgttagcgccgagaaagcgtttggaaaaagttgtacagcaaccggacctcgcgcaa
cacgattttttccagggctggcgggcgcagattcttgctccggttcgcgctgatatcgag
gaattactgaagtcatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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