KEGG   Mariprofundus aestuarium: Ga0123461_0397
Entry
Ga0123461_0397    CDS       T05212                                 
Name
(GenBank) ATP-dependent RNA helicase CsdA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
maes  Mariprofundus aestuarium
Pathway
maes03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:maes00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ga0123461_0397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:maes03019]
    Ga0123461_0397
   03009 Ribosome biogenesis [BR:maes03009]
    Ga0123461_0397
Enzymes [BR:maes01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Ga0123461_0397
Messenger RNA biogenesis [BR:maes03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Ga0123461_0397
Ribosome biogenesis [BR:maes03009]
 Prokaryotic type
  rRNA helicases
   Ga0123461_0397
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 UvrA_inter AAA_19 P-loop_SecA
Other DBs
NCBI-ProteinID: ATX78838
UniProt: A0A2K8KVJ1
Position
374155..376023
AA seq 622 aa
MTTNENIQPTFSELNLHPDVLKGVQDVGYETPSPIQAQTIPLLLEGRDLVGQAQTGTGKT
GAFALPLLSHIDLNKSSPQLLVLAPTRELAIQVAEAFQIYAKHMRGFHVLPIYGGQSYEI
QLRALKRGVHVVVGTPGRVMDHMRRGTLKLDGLRALVLDEADEMLRMGFIDDVKWVLEQT
PSKRQIALFSATMPPVIRKIAEEHLNNPAHITVKVKTSTAETIRQRFLMVSGREKLEALT
RILEAETFDGMIVFVRTKSATEEIATKLEARGFSAAALNGDITQKMRESTVNRLKSGTID
IVVATDVAARGLDVDRISHVINYDIPNDTEPYVHRIGRTGRAGRKGDAILFVAPREKRML
YSIEQATKQRIEQYEMPTTESINNKRIGEFKQRISDTLASDEDMTLFAQIVEQYRVEHDV
SDAQIAAALARMAQGDKSLLLKDQPRRTRPESRDGSDRNPRFEADDKRRSMSRSRSETSD
SSDRAPRRERSAATFSGPRPERGMARYRIEVGETHDVKPGNIVGAIANEMGLDSEFIGNI
QIMDDHSTVDLPEGMPNELFKQFREIRVAGRTLDATCLSDSGDSRPAPTKKRSVGPAGPR
GGKRPPRQGNGPRGGSKPPRRK
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgactacaaatgaaaacattcagcctacctttagtgagctgaacctacacccagacgtg
cttaaaggcgttcaagatgtgggttatgaaacaccatccccaattcaggcacagacgatt
ccactgttattagagggcagggatctcgtgggccaggcgcagacaggtacgggtaaaacc
ggagcctttgctctgccgctgctctcccatattgatttgaacaaaagctcaccgcagctg
ctggtgctggcaccaacgcgcgaactggctattcaggttgctgaggcattccagatctat
gcgaagcatatgcggggcttccatgtgctgccgatctacggcggccagagctatgaaatt
cagttgcgcgcccttaaacgtggcgtgcatgttgtggtagggactccgggtcgtgtaatg
gaccacatgcgccgtggcacactcaagctcgacggccttcgcgcacttgtactggatgaa
gctgacgaaatgctacgtatgggctttatcgacgatgtgaagtgggtgcttgagcagacc
ccttctaagcgtcagattgcactcttctcggcgaccatgccgccagtcatccgcaagatt
gcagaggagcacctcaataatcctgcgcatattacagtgaaggtgaagacctctactgcc
gaaactatccgccagcgttttctgatggtcagtggtcgcgaaaagctggaagcgctgacc
cgcattcttgaggcagaaacgttcgatggcatgatcgtctttgtgcgcaccaaatcggcg
accgaagagatcgcaaccaaactggaggcgcgcggattttccgcagcagccctgaacggt
gatatcacccagaaaatgcgtgagtcgacggttaaccgcctgaagagtggcacgattgat
atcgttgtagctactgatgtggcagcacgcgggctggatgtagaccgaatttcgcatgtg
atcaactacgacattcctaacgatactgaaccctatgttcaccgcatcggccgcaccggc
agggcgggacgtaaaggtgatgctattctctttgtagcaccacgcgagaaacgcatgctt
tacagtattgagcaagcgacgaagcagaggatcgagcagtatgaaatgccgaccactgaa
agcattaacaataaacgcattggcgagttcaagcagcgcatttctgatacgctggcatca
gatgaagacatgacgctgtttgcccagattgttgagcagtaccgggtcgaacatgatgtt
tctgatgctcagatcgctgcagcactggcccgcatggctcagggtgataaatcacttctg
cttaaggatcagccacgacgtacgcgccctgagtctcgtgatggttcagatcgcaatcca
cgattcgaagctgatgataaacgcaggagcatgagcagaagccgcagcgagacatcggat
tcatctgatcgcgcacctcgcagagagaggtctgcagctacgtttagcggccccaggcct
gagaggggcatggcgcgctaccgtattgaggtcggtgaaacgcacgatgtgaaaccgggc
aatatcgttggggctattgccaacgagatgggtctggattccgaatttatcggtaatatc
cagattatggatgatcacagcactgtcgacctgccggaaggcatgcccaatgagctgttc
aagcagtttcgtgaaattcgggttgccgggcgtacgcttgatgccacctgcctgagtgac
tccggggattccaggcctgcgcctacgaaaaaacggagtgttggaccggccggaccaagg
ggtggcaagcgtccaccgcgtcagggcaatggaccaagaggcgggagcaagccaccccgc
aggaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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