KEGG   Paramagnetospirillum magneticum: amb4061
Entry
amb4061           CDS       T00305                                 
Name
(GenBank) Superfamily II DNA and RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mag  Paramagnetospirillum magneticum
Pathway
mag03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mag00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    amb4061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mag03019]
    amb4061
   03009 Ribosome biogenesis [BR:mag03009]
    amb4061
Messenger RNA biogenesis [BR:mag03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     amb4061
Ribosome biogenesis [BR:mag03009]
 Prokaryotic type
  rRNA helicases
   amb4061
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: BAE52865
UniProt: Q2VZW0
Position
4461653..4463521
AA seq 622 aa
MISHRVASRAFAESPGSRSPHRAGPSPPSEESTPLSMDFFPAGHPLLKALTERDYTDPTA
VQEAVLEPGAAGRDLLVSAQTGSGKTVAYGLAIADTLLGDAFVLEPAAEPLALIVAPTRE
LALQVHRELTWLYEHAGARVVSCVGGMDPRAEQRMLGQGAHIVVGTPGRLRDHLERGGLR
INRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSATLPHGIVAMAKRYQRNAW
RIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNLLRYFESPTAMVFCNTRDSVRHLQAILL
ERGFAAVALSGELGQNERNNALQALRDGRARVCVATDVAARGIDLPNLGLVIHAELPQNA
QTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADMLLQTAGVQAIWSGAPSAEDIRKLDQER
LLTSPLLSEENTEDDLAMAKALLAERPAEDIAAALVRMYRSHLPAAEEVFDPGPGNPSRE
PREHREREPRPPREGKGPGLPGGSVWFRMNIGRQKNADPRWLIPMICRQGKVTKAEIGAI
RIFERETRFEIDAGHADRFATALRQIEKAEVRIERLAEHAAEPAAAARPDDRPRPPAGVK
PMGPKKAPWKDKKDGHRKGKPA
NT seq 1869 nt   +upstreamnt  +downstreamnt
gtgatatctcaccgcgttgcttcccgcgccttcgcggaaagcccgggatcgcgctccccc
catcgggccgggccgtcccctccttctgaagaaagcacccctctgtccatggatttcttt
cccgcgggtcatccgctgctcaaggctctgaccgagcgcgactacaccgatcccaccgcc
gttcaggaagcggttctcgagcccggcgccgccggccgcgacctgctggtctcggcccag
accggttcgggcaagaccgtcgcttacggcctggccattgccgacaccttgctgggcgac
gctttcgtgctggagccggcggccgagccgctggcgctgatcgtcgcccccacccgtgag
ctggcgctgcaggtccaccgcgagctgacctggctgtacgagcatgccggcgcccgcgtg
gtgtcgtgcgtcggtggcatggacccgcgcgccgaacagcgcatgctgggccagggcgcc
cacatcgtggtgggcacccccggtcgcctgcgcgaccatctggagcgcggcggcctgcgc
atcaaccgcctgaaggcggtggtgctggacgaggccgacgagatgctcgacctcggcttc
cgcgaggatctggaattcatcctggaggccacgccccaggagcgccgcaccctgctgttc
tcggccactttgccccacggcatcgtcgccatggccaagcgctatcagcgcaatgcctgg
cgcatcgccgtctcggccggaacccagggccatgccgacatcgaataccgcgccgtgcgg
gtggctcccaacgagatcgagcacgcggtggtcaacctgctgcgctatttcgagtcgccc
accgccatggtgttctgcaacacccgcgattccgtgcgccatctccaagccatcctgctg
gagcgcggcttcgccgccgtggcgctgtcgggcgagttgggccagaacgagcgcaacaac
gcgctgcaggcgctgcgtgacggccgcgcccgggtctgcgtcgccaccgacgtggcggcc
cgcggcatcgacctgcccaatctgggactggtcatccatgccgagctgccccagaacgcc
cagaccctgcagcaccgctcgggccgcaccggccgggcgggcaagaagggcgtcagcgtc
ctgctggttctgctgtcgcggcggcgcaaggcggacatgctgctgcagaccgccggcgtc
caggccatctggagcggcgcgccgtcggccgaggacatccgcaagctggaccaggagcgc
ctgctgaccagcccgctgctgtccgaggaaaacaccgaggacgatctggccatggccaag
gccctgctggccgagcgcccggccgaggacatcgccgccgccctggtgcgcatgtaccgc
tcgcatctgcccgccgccgaggaagtgttcgatcccggccccggcaatccatcgcgggag
ccccgcgaacaccgcgagcgcgagccccgcccgccgcgggaaggcaaaggccccggcctg
cccggcggctcggtgtggttccgcatgaatatcggccggcagaagaacgccgatccgcgt
tggctgatccccatgatctgccgccagggcaaggttaccaaggccgagatcggcgccatc
cgcatcttcgagcgggagacccgcttcgagatcgacgccggccacgccgaccgcttcgcc
accgcgctacgccagatcgagaaggccgaagtgcgcatcgagcgtctggccgagcatgcc
gccgagcctgccgccgccgcccggcccgacgaccggccccgtccccccgccggggtcaag
cccatggggccgaagaaggcgccctggaaggacaagaaggacggtcaccgcaagggcaag
ccggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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