KEGG   Monopterus albus (swamp eel): 109955440
Entry
109955440         CDS       T05607                                 
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
  KO
K12878  THO complex subunit 1
Organism
malb  Monopterus albus (swamp eel)
Pathway
malb03013  Nucleocytoplasmic transport
malb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:malb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109955440 (thoc1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    109955440 (thoc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:malb03019]
    109955440 (thoc1)
   03041 Spliceosome [BR:malb03041]
    109955440 (thoc1)
Messenger RNA biogenesis [BR:malb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     109955440 (thoc1)
Spliceosome [BR:malb03041]
 Complex C
  Other components
   EJC/TREX
    109955440 (thoc1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109955440 (thoc1)
SSDB
Motif
Pfam: efThoc1 Death HsdM_N
Other DBs
NCBI-GeneID: 109955440
NCBI-ProteinID: XP_020447258
Position
Unknown
AA seq 661 aa
MSPHSLKFVDTKNKFSASITSALADKNSKSLINTFSQIIGNEAEKKTTLDQALRGVLGDQ
IVEKKAGCDDYLSLIYLSIDAVTEGISSATTPFVLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKHTEEKEDCMEVEEGEMGEDDAPLPCSIPIDYNLYRKFWTL
QDYFRNPVQCYEKFSWMTFLKYSDETLAVFKSYKLDDMQASKRKLEEMRTSGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSTCVLNDDQTTWIEETTKLV
YQLLRETPPDGDKFATMVEHILNTEENWNSWKNEGCPSFVKERTVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNPDNMEACKSDSRSVVQKTREFMPSLDEFFTEAIEQ
ADPANMVEEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKEL
PKDIPSEEIKTGEEDDDDNGDNLLKDSNDSPSIQSKLVTNQQMDDIAAKLGAQWKMLASH
LEMKAVELREIETDSEDVDMQAKLLLVAWQDREGTQATVENLTTALNAAGFSQIADSLNE
A
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgtcgccgcactcattaaaatttgtcgacactaaaaacaagttttcggcttctatcaca
tctgccctggccgataaaaacagcaaatctttgataaatactttcagccagatcatcggc
aatgaggcggaaaagaagaccacacttgaccaggccctcaggggtgttcttggtgatcag
attgttgaaaagaaggcaggctgtgatgattacctgtctctcatctacctgagcattgat
gctgttacagaaggtatctcctctgccacaaccccctttgttctgctgggagatgtattg
gactgccttcctcttgaccagtgtgacaaaatattctcctttgttgaagaaaatgtctcc
acctggaagtcgaactcattttacactgctgggaagaactacttgttaaggatgtgtaat
gatcttttaaggcgcctgtccaaatctcagaatacagtattctgtgggcgaattcagctt
ttcctggcacgcctcttccctctgtctgagaaatcaggtctcaacctacagagccagttt
aatctggacaatataactgtattcaataaaaatgaacaagaaagcactctcggacagaag
cacacagaagaaaaggaagattgtatggaggtggaggaaggagaaatgggggaggatgat
gctccactaccctgttccattccaattgattacaacttgtacagaaagttctggacgctg
caggactacttcagaaaccctgtgcagtgctatgaaaaattctcttggatgacattcctt
aagtactcagatgagaccttggcagtattcaagagctacaagttggatgacatgcaggcc
tctaagaggaagctggaggagatgagaacatcagggggagaacatgtctactttgccaag
ttcctcacaagtgaaaagctgatggacctacagctcagcgacagcaacttcaggcggcat
atactactgcaatacctcatcctcttccagtacctgaagggtcaggtcaagttcaaaagt
tccacctgtgttctgaatgatgaccaaactacgtggattgaagaaacaactaaactggtc
taccagctgctgagagagaccccccctgatggagacaagtttgccaccatggttgaacat
atcctcaacacagaggagaactggaattcctggaaaaacgagggatgcccgagctttgta
aaagagaggacagttgatgacaaacctaaaagacccaccaggaaaagacaagcaccagaa
gacttcctaggaaaaggaccagaccgcaagatcttcatgggaaatgatgagctgactcga
ctgtggaacctgaacccagacaatatggaagcctgcaagtcagacagcaggtcagtggtt
cagaaaacaagggagttcatgccatcactagatgaattcttcactgaggccatcgaacag
gctgaccctgctaacatggtggaggaagagtacaaggttgtacggaacccaaactacggc
tggcgcgctctcagactgctgtccaggagaagcccacacttctttcaaccaactaatcag
aagttcaagagcctggctgactacctagacagcatggtcagcaaactggctaaagaactg
ccgaaagatatcccatctgaagagataaagacaggagaagaggatgatgacgataatgga
gacaatcttctcaaagacagcaatgacagtccgagcatacagagcaagctggtgacaaat
cagcagatggatgacattgcagctaaactgggggctcagtggaagatgctggcttctcat
ttggagatgaaggcggtagagttgcgagagattgaaacagacagtgaagatgttgacatg
caggccaaactgctgcttgtagcctggcaggacagagagggaacacaagctactgtggag
aacctgaccacagctcttaatgctgcagggttctcccagattgcagacagcctcaatgag
gcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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