KEGG   Methanogenic archaeon ISO4-H5: AR505_0814
Entry
AR505_0814        CDS       T04272                                 
Name
(GenBank) DNA repair helicase Rad3
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
marc  Methanogenic archaeon ISO4-H5
Pathway
marc03022  Basal transcription factors
marc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:marc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AR505_0814
  09124 Replication and repair
   03420 Nucleotide excision repair
    AR505_0814
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:marc03021]
    AR505_0814
   03400 DNA repair and recombination proteins [BR:marc03400]
    AR505_0814
Enzymes [BR:marc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     AR505_0814
Transcription machinery [BR:marc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AR505_0814
DNA repair and recombination proteins [BR:marc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AR505_0814
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 HBB ResIII DEAD Helicase_C zf-ribbon_3 nSTAND3 DZR_2 DZR zinc_ribbon_2 AAA_19 T2SSE UTP25
Other DBs
NCBI-ProteinID: AMH94535
UniProt: A0A0X8V0V7
Position
865347..867395
AA seq 682 aa
MKTRFCPNCGSMTFPGMPRCSSCGMPLDGSVENWSPPPKSDGPKIIAAVNPSAPYLPYEP
REVQLDIIKDIRTALEAGKHIVIESGTGTGKTITSLAGSLEFAKAHGKKIIYITRTISQS
DQVMKELKAISTLKPVSGITLTGRNKSCPLLQSRSDFDNLSPNALSTLCSDRKQRSQQGR
SGGCPYFDQVSHQMDTVEAYCKRAFPKSDEIDAYCRGLKVCPYEVKKVMMKDFDVIVAPY
IHIIDPDIRDNFLSVLDVEPKDIVLIVDEAHNLMDAVREQESFSINLRLVNSALDECGVL
KKPEVADGVAIDELVKAVKNSMRDLASGRIAFGGTEALLKADELEESLCKMLGTDRQHLG
MMVERMNEIGENRQDAIADTDAPSCPLLELAVLLRRWVKSPSDRYVKAVRVNEDGEVLTA
GCIDPVDIGKFMNELKGAVHMSGTLQPLSTYAKVLGLPMDSIPRTYPSPFPKENKLVIYS
KDLTTNYQELQRNPAMKQQLQRTVAQLCNAVDKNILVFMPSYRVMKEMRPYLEEAIYKNL
YWEESGRQKKTMAALDQFRSGRSGVFVCVMGGSIAEGMDFPGDELCFAVIVGIPYPPPSL
EIKAMKDMFDQKYGPGFGWRLTSQIPAVRKMRQAIGRLIRTPTDRGMAVILDNRAARDAR
QLEAVPSDDPVADAVKFFAKKA
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgaagacaaggttctgtcccaactgcgggtctatgacattccccggaatgccccgctgt
tcttcctgcggaatgcctctcgacggatccgtcgagaactggagtcctccgcctaagagc
gacggtcctaagatcatcgcagctgtgaacccttccgccccttatcttccgtacgaaccg
agggaggtgcagttggatatcatcaaagatatccgcaccgctttggaagcggggaagcac
attgttatcgaatcggggaccggtaccggtaagaccatcacctcccttgcaggatccctc
gaattcgccaaggcccacgggaagaagatcatctacatcacccgtaccatctctcaatcg
gatcaggtcatgaaggagctgaaggccatctccaccttgaagcccgtgtccggaatcacg
cttacgggaaggaacaaatcctgtcctcttctccagtcccgttcggatttcgataacctg
tcgccgaacgcattgtccaccctgtgctccgacaggaagcagaggagtcagcagggacgc
agcggaggctgcccctacttcgaccaggtaagccatcagatggataccgtcgaagcgtac
tgcaaacgtgccttccccaaatccgatgagattgatgcctattgcagaggactcaaagtc
tgtccctacgaagtcaagaaggtgatgatgaaggacttcgatgtcatcgtcgcgccctac
atacatatcatagacccagacatcagggataacttcctgtcggtgctcgatgtggagccc
aaggatatcgttctcatcgtggatgaggcgcacaacctgatggatgccgtcagggagcag
gagagcttctctatcaatctcaggttagtcaattcggccctcgacgaatgcggtgtgctg
aagaaaccggaagtagccgacggcgtggccatcgacgaacttgtgaaagcagtcaagaac
tcgatgcgtgacctggccagcggaaggatcgcattcggagggaccgaggccctgctcaaa
gcggatgaactcgaggaatccctctgtaaaatgctcggaaccgacaggcagcacctcggc
atgatggtcgagaggatgaacgagatcggcgagaacaggcaggatgccatcgccgatacc
gacgcaccttcctgtcctctgctcgaactcgcggtactgctccgcaggtgggtaaagtct
ccctccgacagatatgtgaaagcggtccgcgtcaacgaggacggtgaggtcctcaccgcg
ggatgcatcgatccggtggacatcgggaagttcatgaatgagctcaaaggggctgttcac
atgtccggaactctgcagcccttatccacttacgcgaaggttctgggtcttccgatggat
tccattccccgcacctatccttcaccgttccccaaggagaacaaactcgtcatctattcc
aaggatctgaccaccaactatcaggaacttcagaggaatcccgccatgaagcagcagctg
cagcgtaccgtcgcccagctctgcaatgcggttgacaagaacatcctggtcttcatgccg
tcataccgtgtgatgaaggagatgagaccctatctggaggaggccatctacaagaatctc
tactgggaagaatccggcaggcagaaaaagaccatggccgccctcgatcagttcaggagc
ggccgttcgggtgtcttcgtctgtgtcatgggcggttccatcgcggaaggaatggacttc
cccggcgatgaactgtgttttgcagtcatcgtaggcataccgtaccccccgccgtctctg
gagatcaaggccatgaaggatatgttcgaccagaaatacggtccaggtttcggttggagg
ctgaccagtcagattcctgcggtcaggaagatgagacaggccatcgggcgtcttatcagg
actcccacggacagaggtatggccgtgattctcgacaaccgtgctgcccgcgatgccaga
cagctggaagccgtcccctctgacgaccctgtggcagatgccgtcaaattttttgcgaaa
aaagcgtaa

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