KEGG   Marinobacter sp. CP1: ACP86_02575
Entry
ACP86_02575       CDS       T04052                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
mari  Marinobacter sp. CP1
Pathway
mari02020  Two-component system
mari02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:mari00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACP86_02575
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ACP86_02575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mari03021]
    ACP86_02575
Transcription machinery [BR:mari03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACP86_02575
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: AKV98596
UniProt: A0A0K1UFM4
Position
548399..549919
AA seq 506 aa
MKASLQLKLGQSLTMTPQLQQAIRLLQLSTLDLQQEIQQALESNPMLETSEDDDQTDAAS
ENDEREANATESAAEAAPEPASDWDESENGPDWSSENEIPDNIPDDLPVDTAWDDIYQSA
PAPAARNDDENDHDFETRNSPTETLQDHLEWQLNLTPLSERDQAIAHALMDAVDERGYIT
SPLEEIHAGLLDENDEDPLELDEVEAVLHRLQHFDPPGVFARDLQECLLIQLNQLPPETP
WLAQARLVITHYINLLGNRDYAQLLRRSRLKEDQLRDVLALITGLNPRPGDVIDRAEPDY
VIPDVIVRKHNGRWRVELNPEIAPRIRVNASYASLIRRADSSADNTYLRDQLQEAKWFIK
SLQSRNETLLKVATRIVEHQQGFLDHGEEAMKPLILSDIAQAVEMHESTISRVTTQKYMH
TPRGIFELKYFFSSHVSTDEGGECSSTAIRAMIKKLIAAETPKKPLSDSKIAAMLGEQGI
KVARRTVAKYREAMHIPPSNERKRLV
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgaaagcctccttacagttaaagctgggtcaaagcctgaccatgacgccccagctgcaa
caggcgatccggcttctccagctctccactctcgacctccagcaggaaatccagcaggca
ctggaatccaaccccatgctggagacctccgaggacgatgaccagaccgacgcagccagc
gaaaacgacgagcgcgaggccaacgccaccgagtccgccgctgaagctgccccggaaccg
gccagcgactgggatgaatccgagaacggcccggactggtcctcggagaacgagattcct
gacaacattccggacgatctgccggttgataccgcctgggacgacatctaccagtccgca
ccagcgccggcagcccgcaacgacgacgaaaacgatcacgatttcgaaacccgtaattcc
ccgaccgaaacgcttcaggatcacctggaatggcagctcaatctgacgcccctcagtgaa
cgggaccaggccattgcccatgccctgatggatgcagtggacgaacggggctatatcacc
agcccgctggaggaaatccacgccggactgctggatgagaacgatgaagacccccttgaa
ctggatgaagtggaagccgtgcttcaccgcctgcaacactttgatccgcccggcgtgttt
gcccgggacctacaggaatgcctgctgatccagctcaaccagctgccgccggaaacaccc
tggctggcccaggcacgccttgtaattacccattacatcaacctgctgggcaaccgcgat
tacgcccagttgctgcgccgcagccgcctgaaagaagaccagttgcgggatgtcctggcg
ctgatcaccggcctgaatccgcggccgggcgatgtcattgaccgggccgaacccgattat
gtgattccggacgtgatcgttcgcaaacacaatggccgctggcgtgttgagctgaatcct
gaaattgcaccgcgcatccgggtcaatgccagctatgcttcacttataaggcgtgcggac
agcagcgcagacaacacctacctgcgcgaccagttgcaggaggccaagtggttcatcaag
agcctgcagagccgcaatgagaccttgctgaaagtcgcgacccgtattgtcgagcaccag
cagggattcctggatcacggtgaagaagccatgaaaccgttgattctttcagacatcgcc
caggcggtagagatgcatgaatcgaccatttcacgggtaaccacccagaaatacatgcat
accccccgtggcattttcgagctgaagtacttcttctccagccatgtcagcactgacgag
ggtggagaatgctcctccacggccatacgcgcgatgatcaagaagctgattgcggcggaa
acgcccaaaaagccgttgagcgacagcaaaattgcagccatgctaggggaacagggtatc
aaggttgcgcgacgcaccgttgccaagtaccgggaggccatgcacattccgccgtccaac
gagcgcaagcggctggtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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