KEGG T04633: LN42

Marinitoga sp. 1137: LN42_07005

Entry

LN42_07005        CDS       T04633

Name

(GenBank) tRNA-splicing ligase

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

marn Marinitoga sp. 1137

Brite

KEGG Orthology (KO) [BR:marn00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:marn03016]
    LN42_07005
Enzymes [BR:marn01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     LN42_07005
Transfer RNA biogenesis [BR:marn03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    LN42_07005
Prokaryotic type
   tRNA splicing ligases
    LN42_07005

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

APT76159

Position

1418418..1419797

AA seq 459 aa
MDIIRENKYMWKVEKFKNMKVPVYVLTDSQTIRSQEYHEAIMQLVNVATLPGIVKGSFGM
PDIHWGYGFPIGGVAAFDADSGIISPGGVGFDINCGVRIMTTSLEFSEIKDYIDEILTRV
YNEIPVGVGSRTNFKLSVKEMKKILNNGVYWAINNNYGLAEDLYNIEDSGKIKYADADFV
SDEAIKRGADELGTLGSGNHFIEIQIVEKVFEKENAERYGLFEGQIVYMIHSGSRGLGHQ
VATDYIKIFRDNLKDWNKKIPDKQLINAPFKSKYGQEYFSAMNAAANFAFVNRQIMGHKI
RNIFKDLFDVESKLLYDITHNIAKLEKHNVDGEEKELIVHRKGATRAFPDQIVLIPGSMG
SSSYILLGTEKSMSIAFGSSAHGAGRVLGRRQAKRRLNYKNVLNSMKEKKIKIISKSKNT
IVEEAPEVYKDVDSVVDIIEKIGISRKIAKLTPVGVVKG

NT seq 1380 nt +upstreamnt +downstreamnt
atggatattataagagaaaataaatatatgtggaaagttgaaaaatttaaaaatatgaaa
gttcctgtttatgttttaaccgattcccaaactattcgtagccaggaatatcatgaagct
attatgcaattggttaatgttgctacattaccagggattgtgaaaggttcttttggtatg
ccagatatacattggggttatggttttccaataggtggtgtcgcagcatttgatgctgat
agtggtattatttctcctggcggagttggatttgatattaattgtggtgttagaataatg
actacctctctcgaattttcagagataaaagattatatagatgagatactaaccagagtt
tataatgaaattcctgttggcgtcggctccagaacgaattttaaattgtctgtaaaggaa
atgaagaaaatcctgaacaatggtgtatattgggcaataaataataattacggtttggca
gaagatttgtataatattgaagatagcggtaaaattaagtacgcagatgcggattttgtt
agtgatgaagcgataaaaagaggagcagatgaattagggactcttggatctggaaatcat
tttattgaaatccagattgttgaaaaggttttcgagaaagaaaacgctgaaagatacggt
ctttttgaaggtcaaattgtatatatgattcattcaggttcaagaggtcttggacatcag
gttgcaacagattatataaaaattttcagagataatttaaaagattggaataaaaaaatt
ccagataaacagttaataaatgctccttttaaaagcaaatatggtcaggaatatttttct
gcaatgaatgctgctgccaattttgcctttgttaatagacagataatgggacataaaata
agaaatatttttaaggatttatttgatgttgaatctaaattgttatatgatattacgcat
aatatagcaaaattggaaaagcataatgttgatggtgaagagaaagagttaattgttcac
agaaagggtgctacaagagcgtttccggaccaaatagtgttgattcctggaagcatggga
agttcttcatatattttgctgggtacagagaaatctatgagtattgcatttggctcatct
gctcatggagcagggagagttttaggtagaagacaggctaaaagaagattaaattataaa
aatgttttaaattcaatgaaagaaaaaaagataaagataatttcgaaatcaaaaaatacc
attgttgaggaagcaccagaagtgtataaagatgtagattctgttgttgatattatagaa
aaaattggaatatccagaaagattgcaaagttaacccccgttggagttgtaaagggttaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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