KEGG   Massilia violaceinigra: CR152_17125
Entry
CR152_17125       CDS       T05157                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
mass  Massilia violaceinigra
Brite
KEGG Orthology (KO) [BR:mass00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mass03009]
    CR152_17125
Enzymes [BR:mass01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     CR152_17125
Ribosome biogenesis [BR:mass03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CR152_17125
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 RrnaAD Methyltransf_25 Met_10 MTS Methyltransf_15 Cons_hypoth95 TRAM PCMT Methyltransf_11 UPF0020
Other DBs
NCBI-ProteinID: ATQ78939
UniProt: A0A2D2DVD6
Position
3852270..3853610
AA seq 446 aa
MQDTILDIKSLDMDARGVGHLANEDGSPGKVIFVEGALPGEKVSFHTFKKKKNWEAARMT
VLHKPSSMRVEPKCPHFDNCGGCSMQHLEPSAQVAMKQRVLEDNLWHIGKVKPGNVMRPM
YGPTWGYRYRARLSVRHVAKKDTVLVGFHEKRSAFVADMSDCKILPPHVAAMLLPLRALV
GALSIFDQMPQIEIAVGEETTAMVLRIMAPLTGADETVLKSFADQWNIQWWLQTKGPETA
APFYPLGKELYYTLPEFGVKMPFKPVDFTQVNHHINRVLVGKALNLLEVQPSDRVADLFC
GLGNFTLPLATQAREVVGIEGSTTLTERALSNARANGLSEKTSFSTRNLFEVTAEDLVEL
GKFDRMLIDPPRDGAMALVQALAALRLSHPEMLPKRIVYVSCSPSTLARDAGILTHEAGY
QLSKAGVVNMFPHTSHVESMAVFDLV
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgcaagacaccattctcgacatcaaatccctggacatggacgcccgcggcgtcggccac
ctcgccaacgaggacggttcgccgggcaaggtcatcttcgtcgagggcgccttgccgggc
gaaaaggtcagctttcataccttcaagaagaagaaaaactgggaagcggcgcgcatgacg
gtgctgcacaagccgtcgtcgatgcgggtcgaaccgaaatgcccgcatttcgacaattgc
ggcggctgctcgatgcagcacctggagccctcggcccaggtggcgatgaagcagcgcgtg
ctggaagacaatttgtggcatatcggcaaggtcaagccgggcaatgtgatgcgcccgatg
tatggcccgacctggggctaccgctaccgcgcgcgcctgtcggtgcgccatgttgccaaa
aaagatacggtgctggtggggtttcacgaaaagcgctcggcgtttgtcgccgacatgagc
gactgcaagatcctgccgccgcacgtggccgccatgctgctgccgctgcgcgcgctggtg
ggcgccttgtcgatcttcgaccagatgccgcagatcgaaatcgcggtcggcgaggaaacc
acggccatggtgctgcgcatcatggcgccgctcactggcgccgatgaaacggtgcttaaa
agctttgccgaccagtggaatatccagtggtggctgcaaaccaagggtccggaaacggcc
gcgccgttctatccgctaggcaaggaactgtattacaccctgcccgagttcggcgtgaag
atgccgttcaagccggtcgattttacccaggtcaaccaccacatcaatcgggtgctggtc
ggaaaagcgctcaatctgctggaggtgcagccgagcgaccgcgttgccgacctgttctgc
ggcctgggcaactttaccttgccgctggccacgcaggccagggaagtggtcggcatcgaa
ggcagcaccaccctgaccgagcgcgcgctgtcgaatgcgcgcgccaacgggctgtcggag
aagaccagcttttcgacccgcaacctgttcgaggtgacggcggaagacctggtcgaactc
ggcaagttcgaccgcatgctgatcgacccgccgcgcgacggcgccatggccctggtgcaa
gccctggccgccctgcgcctgagccatcccgagatgctgcccaagcgcatcgtgtacgtc
tcgtgcagtccatccaccctggcgcgcgatgccggcatcctgacccacgaggcgggctac
cagttgagcaaggcgggcgtggtcaatatgttcccgcacacctcgcacgtggaatcgatg
gccgtgttcgacctggtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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