KEGG   Mycobacterium avium subsp. paratuberculosis E1: RC58_06440
Entry
RC58_06440        CDS       T03787                                 
Name
(GenBank) cold-shock protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mavi  Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mavi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RC58_06440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mavi03019]
    RC58_06440
   03009 Ribosome biogenesis [BR:mavi03009]
    RC58_06440
Enzymes [BR:mavi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     RC58_06440
Messenger RNA biogenesis [BR:mavi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RC58_06440
Ribosome biogenesis [BR:mavi03009]
 Prokaryotic type
  rRNA helicases
   RC58_06440
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 UvrA_inter
Other DBs
NCBI-ProteinID: AJK74702
UniProt: A0A7U6EM01
Position
1364263..1365963
AA seq 566 aa
MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE
HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGVL
INLQPDRAAAKARGRDGGKPRRKYGG
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgaccctcccggacagctcgactgaggctgcctccccgacatttgccgacctgcagatc
catccctcggttttgcgggcgatcgccgacgtcggctacgagacgcccaccggcatccag
gccgcgaccatcccggcgttgatggccggttccgacgtcgtcgggctggcccagaccggc
accggcaagacggccgcgttcgcgatcccgatcctgtccaagatcgacgccgccagcacc
gccacccaggcgctggtgctggcgcccacccgggagctggcgttgcaggtggccgaggcg
ttcagccgctacggcgcgcatctgccgaagatcaacgtgctgccgatctacggcggctcg
tcctacgccgtgcagctggccggattgaaacgcggcgcccacgtggtggtcggcacgccg
ggccgggtgatcgaccacctcgagcgcggcacgctggacctgtcgcacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatggggtttgccgaagaggtcgaccgcatc
ctgtccgagaccccggaatacaagcaggtcgcgctgttctcggcgaccatgccgcccgcg
atccgcaagctcaccgccaagtatctgcacgatcccctcgaggtcagcaccaaagcgaaa
accacgaccgccgagaacatttcgcagcgctacatccaggtcgccggcccgcgcaaaatg
gacgcgctgacccgggtgctggaggtcgagccgttcgaggcgatgatcgtgttcgtccgg
accaaacaggccaccgaggaagtcgccgaaaggctcagggcgcgcggcttctcggcggcc
gcgatcaacggggacatcccgcagggccagcgtgagcggaccgtcgccgccctcaaggac
ggcggcatcgacatcctggtcgccaccgacgtagccgcccgcggcctggacgtcgaacgg
atctcacacgtgctcaactacgacatcccgcacgacaccgagtcctacgtgcaccggatc
ggacgcaccggccgggcgggacgctcgggaaccgcgctgctgttcgtctccccgcgagaa
cgccacctgctcaaggccattgagaaggcgacccgccagccgctcaccgaagccgagctg
cccaccgtcgaggacgtcaacgcccagcgggtggccaagttcgccgactccatcaccgcc
gcgctcggcgctcccggcatcgatctgttccgcaagttggttcaggactacgaacgcgag
cacgacgtcccgatggccgatatcgccgccgcgctggccgtgcagtcacgcgacggcgag
gagttcctgatggcgcccgaaccgccgcgggagcgacgcgaacggcacaccgaacggcgc
gagcgcaccgagaaacccaggagcacaaggccgttggccacctaccgcatcgcggtgggc
aaacggcacaagatcggtccgggcgcgatcgtgggcgccatcgccaacgagggcgggctg
catcgcagcgatttcggccacatcgccatcggacccggcttctcgctggtggagttgccg
gccaagctgcccaagtcgacgctgaaaaggcttgagcagacccgcatctccggagtgctg
atcaacctccagccggaccgggcggcggccaaggcgcgcggtcgggacggcgggaaacca
cgcaggaaatacggcggatga

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