KEGG   Mycobacterium avium subsp. paratuberculosis E1: RC58_15170
Entry
RC58_15170        CDS       T03787                                 
Name
(GenBank) helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
mavi  Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    RC58_15170
  09124 Replication and repair
   03420 Nucleotide excision repair
    RC58_15170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mavi03021]
    RC58_15170
   03400 DNA repair and recombination proteins [BR:mavi03400]
    RC58_15170
Enzymes [BR:mavi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RC58_15170
Transcription machinery [BR:mavi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     RC58_15170
DNA repair and recombination proteins [BR:mavi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     RC58_15170
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom Cox20
Other DBs
NCBI-ProteinID: AJK76196
UniProt: A0A7L5MM35
Position
3351593..3353242
AA seq 549 aa
MSDGPLIVQSDKTVLLEVDHELAGAARAAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLEEVL
RNKKIAPMLGARIDDDTVVVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHPISLTEDGW
QLRDYQQMAADSFWSGGSGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRE
LVARTSLTEDEIGEYSGERKEIRPVTISTYQMITRRTRGEYRHLELFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECVEVRVTMTDNERMMYATAEPEERYRLCSTVHTKIAVVKSILDKHPGEQTLVIGAYLD
QLDELGEQLGAPVIQGSTRTKEREELFDAFRRGEVNTLVVSKVANFSIDLPEAAVAVQVS
GTFGSRQEEAQRLGRLLRPKSDGGGAVFYSVVARDSLDAEYAAHRQRFLAEQGYGYIIRD
ADDLLGPAI
NT seq 1650 nt   +upstreamnt  +downstreamnt
atgtctgacggaccgttgatcgtgcagtcggacaagacggtactgctcgaagtggaccac
gaactcgccggcgcggcgcgggccgccatcgcgccgttcgccgagctggaacgcgcaccc
gagcacgtgcacacctaccggatcaccccgctggcgctgtggaacgcgcgggccgccggc
cacgacgccgaacaggtggtcgacgcgctggtcagcttctcccgctacgcggtgccccag
ccgctgctggtcgacatcgtcgacaccatggcccgctacggccggctgcagctggtgaag
aaccccgcgcacggcctgaccctggtgagcctggaccgcgcggtgctcgaggaggtgctg
cgcaacaagaagatcgccccgatgctcggcgcccgcatcgacgacgacaccgtcgtcgtg
catcccagcgaacgcggccgcgtcaagcagatgctgctcaaaatcggttggcccgcagag
gatctcgcgggctacgtcgacggcgaggcgcatccgatcagcctgaccgaggacggctgg
cagctgcgcgactaccagcagatggccgccgactcgttctggtccggcggctccggggtg
gtggtgctgccctgcggcgccggcaagacgctggtcggggcggcggcgatggccaaagcc
ggcgcgacgacgctgatcctggtgaccaacatcgtcgcggcgcggcaatggaagcgcgag
ctggtggcccgcacctcgctgaccgaggacgagatcggcgaatactcgggcgagcgcaag
gagattcgcccggtcaccatctcgacctaccagatgatcacccgccgcaccaggggcgag
taccggcatctggagctgttcgacagccgcgactggggcctgatcatctacgacgaggtg
cacctgttgccggcgccggtgttccggatgaccgccgatctgcagtccaagcggcgcctg
gggctgaccgccaccctggtccgcgaggacggccgggagggcgacgtgttctccctgatc
gggccgaagcgttacgacgcgccgtggaaggacatcgaggcgcagggctggatcgcgccg
gccgaatgcgtcgaggtgcgggtcaccatgaccgacaacgagcggatgatgtacgccacc
gccgaacccgaggagcgctaccggctgtgctcgacggtgcacacgaaaatcgctgtggtg
aaatcgatcctggacaagcatccgggtgaacagaccctggtgatcggcgcgtacctcgat
cagctcgacgagctcggtgagcagctgggcgccccggtgatccagggatccacccggacc
aaggaacgcgaagagctcttcgacgcctttcgccgcggcgaggtgaacaccctggtggtg
tccaaggtcgccaacttctccatcgacctgccggaagccgctgtggcggtgcaggtttcc
ggcaccttcgggtcacgccaggaggaggcgcagcggctgggccggctgttgcggcccaag
tccgacggcggcggcgccgtcttctattcggtggtggcgcgcgacagcctggacgccgag
tacgccgcgcaccggcagcgcttcctggccgagcagggctacggctacatcatccgcgac
gccgacgacctgctgggcccggcgatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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