KEGG   Methanosarcina barkeri Fusaro: Mbar_A1394
Entry
Mbar_A1394        CDS       T00271                                 
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
  KO
K03124  transcription initiation factor TFIIB
Organism
mba  Methanosarcina barkeri Fusaro
Pathway
mba03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mba00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Mbar_A1394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mba03021]
    Mbar_A1394
Transcription machinery [BR:mba03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     Mbar_A1394
 Prokaryotic type
  Archaeal type
    TFB
     Mbar_A1394
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon OrfB_Zn_ribbon Sigma70_r4 Lar_restr_allev LysW-like_globular RPA_interact_C Zn_Tnp_IS1595 Trm112p Zn_ribbon_SprT HTH_AsnC-type HTH_Tnp_ISL3 A2L_zn_ribbon Ribosomal_S27e DUF35_N
Other DBs
NCBI-ProteinID: AAZ70354
UniProt: Q46CN8
Position
1:complement(1717375..1718388)
AA seq 337 aa
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFEKEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggtagaagtcgaaagagttcgctattctgacactcttgaaagagaaaaaatacgtgcc
atgatcaaagctcgcaaagagaaacaaaaggagcaaagttttgagaaagaaaaggccgtg
tgtccagaatgcggcagcagaaacctcgtccacgactatgagcgagccgaactcgtgtgt
ggggactgcggacttgtcattgatgccgattttgtggatgaaggcccagaatggcgagct
ttcgatcatgatcaacgtatgaagcgttcccgtgtgggtgcgcccatgacatacacaatc
cacgacaaagggctttccacaatgattgactggaggaaccgcgactcctatggaaagtca
atatcttccaaaaatcgtgctcagctttatcgtttaagaaaatggcagcgtagaatccgt
gtaagtaacgcaactgaaagaaaccttgcatttgcactatctgaactggacagaatggct
tcggctctcggtcttccgagaactgtgcgggaaaccgcagctgtcgtctacagaaaagct
gtggacaagaaccttatccgtggaagaagcattgaaggtgttgccgcagccgctctttat
gctgcttgccgccagtgtagcgtcccaagaactcttgatgaaatcgaagaggtatccagg
gtcagccggaaagaaatcggaagaacttaccgttttatttccagagaactcgcactaaag
ctcatgcccacgtctcctatagactatgtcccaaggttctgttcaggccttaatcttaaa
ggagaagtccagtcaaagagcgttgagatcctgaggcaggcttccgaaaaggaactcaca
agcgggagaggtcccacaggagttgctgccgctgcaatttatattgcttccattctctgc
ggtgaacggagaactcagcgggaagttgcagatgtagccggggttacggaagtcactatc
cgaaacagatacaaagagcttgcagaagagctggatatagagattattctctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (23)   

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