KEGG   Candidatus Methylopumilus turicensis: BN1209_0004
Entry
BN1209_0004       CDS       T03844                                 
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
  KO
K03530  DNA-binding protein HU-beta
Organism
mbac  Candidatus Methylopumilus turicensis
Brite
KEGG Orthology (KO) [BR:mbac00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbac03032]
    BN1209_0004 (hupB)
   03036 Chromosome and associated proteins [BR:mbac03036]
    BN1209_0004 (hupB)
   03400 DNA repair and recombination proteins [BR:mbac03400]
    BN1209_0004 (hupB)
DNA replication proteins [BR:mbac03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    BN1209_0004 (hupB)
Chromosome and associated proteins [BR:mbac03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    BN1209_0004 (hupB)
DNA repair and recombination proteins [BR:mbac03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      BN1209_0004 (hupB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 Arteri_nsp7a HU-CCDC81_euk_2 DUF2267 HU-CCDC81_euk_1 HU-DNA_bdg PqqD
Other DBs
NCBI-ProteinID: CEN55066
UniProt: A0A0B7IXA7
Position
1:complement(5757..6041)
AA seq 94 aa
MTTPMNKQELIAKIAAEADISKAAAAKAVDAFTGSVTAALKGGDTVTLIGFGTFAVSNRA
ARIGRNPQTGKELKIAARKAPAFRAGKALKDALN
NT seq 285 nt   +upstreamnt  +downstreamnt
atgactactcctatgaacaaacaagaattgattgctaagattgctgctgaagctgacatc
tctaaagctgctgctgctaaagctgtagacgcttttactggtagcgttactgctgcactt
aaaggtggtgatactgttacattgatcggcttcggtacatttgctgttagcaaccgtgct
gctcgcatcggtcgtaacccacaaactggtaaagaacttaaaatcgctgcacgtaaagca
ccagctttccgcgcaggtaaagctttgaaagatgcattaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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