KEGG T05575: HYN46

Aquirhabdus parva: HYN46_15655

Entry

HYN46_15655       CDS       T05575

Name

(GenBank) RtcB family protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

mbah Aquirhabdus parva

Brite

KEGG Orthology (KO) [BR:mbah00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mbah03016]
    HYN46_15655
Enzymes [BR:mbah01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     HYN46_15655
Transfer RNA biogenesis [BR:mbah03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    HYN46_15655
Prokaryotic type
   tRNA splicing ligases
    HYN46_15655

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

AXI04147

UniProt:

A0A345PA38

Position

complement(3454883..3456154)

AA seq 423 aa
MKKMNTSMIETATHMPAERLHDVMQAEGGVPIKMWTQGVPVEEGAKSQLIKAAKMPFIYK
WMAVMPDVHVGIGATIGSVIPTKGAIIPAAVGVDIGCGMMAVKTSLTASDLPDNLSGLRT
ELERLIPHGMTPKRSGRDRGSWHDAPERVDQAWAGLADDFDLICAKNPKLKNTNNRKHLG
TLGTGNHFVEVCLDEHDSVWIMLHSGSRGVGNAIGNHFIEQARKDMQTHFINLPDRDLAY
FPEGTEHFDDYWFAVGWAQRFAMTNREIMMENALKALRNVIPRAFDARVEAVNCHHNYVD
RELHFGEEVLVTRKGAVRARLGEYGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVMSR
TEAKKRYTVADQVAQTEGVECRKDEGVIDEIPSAYKDIDAVMFAQRELVEVVYTLRQVVC
VKG

NT seq 1272 nt +upstreamnt +downstreamnt
atgaagaaaatgaacacctcgatgattgaaacagcgacccatatgcccgctgaacgtctg
cacgatgtgatgcaggctgaaggcggtgtgccgatcaagatgtggacgcaaggcgtgcct
gttgaagagggtgccaagagccaactgatcaaagcggcaaagatgccttttatctataag
tggatggccgtgatgccggacgtgcatgtgggaattggtgccacgatcgggagtgtgatc
ccgactaaaggcgcgattattcctgctgcggtgggtgtggatatcggatgtggaatgatg
gcggtgaaaactagcctgactgcatcagatctacccgataacttgtctggtctgcggaca
gagcttgagcgtttgattccacacggaatgacgccgaagcgtagtggacgcgatcgggga
tcatggcatgacgcacctgagcgtgtagatcaggcttgggcgggattggctgatgacttc
gatctcatctgcgcgaagaatccgaagctgaaaaacactaacaaccgtaagcatctgggg
acactgggaacgggtaaccactttgttgaagtgtgtctggatgagcacgattcagtgtgg
atcatgctgcactcagggtcgcgtggggtggggaacgcgattggaaaccatttcattgag
caggcgcggaaagatatgcaaacgcattttatcaacctgcctgatcgagacttggcgtac
ttcccagaagggaccgagcactttgatgactactggtttgcggtaggttgggcacagcgc
ttcgcgatgaccaaccgtgagatcatgatggaaaacgccttgaaggccctacgcaatgtg
attccgcgtgcctttgatgcccgtgttgaagcagtgaactgtcatcataactatgtggac
cgtgagctgcacttcggtgaagaggtattggtaacacgtaaaggtgcggtgcgggcgcgt
ctgggtgagtatgggattatcccgggatcaatgggtgcgaagtcatttatcgtccgtggt
ctgggaaatgagcaatcgttttgctcctgctcgcatggtgcaggacgcgtaatgagccgt
actgaagcgaagaagcgttataccgtggccgatcaagtggcgcagacggaaggggtggaa
tgtcggaaagacgaaggggtgatcgatgagatcccatcggcgtataaagacatcgatgcc
gtgatgtttgcacaacgtgaactggtggaagtggtgtatacgctgcgtcaggtggtgtgt
gtgaaggggtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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