KEGG T04533: MSBR3

Methanosarcina barkeri 3: MSBR3_0952

Entry

MSBR3_0952        CDS       T04533

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

mbak Methanosarcina barkeri 3

Brite

KEGG Orthology (KO) [BR:mbak00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbak03032]
    MSBR3_0952
   03400 DNA repair and recombination proteins [BR:mbak03400]
    MSBR3_0952
Enzymes [BR:mbak01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MSBR3_0952
DNA replication proteins [BR:mbak03032]
Prokaryotic type
  DNA Topoisomerases
   MSBR3_0952
DNA repair and recombination proteins [BR:mbak03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MSBR3_0952

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim HHH_5 Cdd1 DUF4332 BAF DNA_pol_lambd_f Cas_TM1802 IMS_HHH DUF2283

Other DBs

NCBI-ProteinID:

AKB81530

UniProt:

A0A0E3WW23

Position

complement(1286408..1288699)

AA seq 763 aa
MHLIVTEKNIAARRIAAILAPKNPKKDRVSGVDVYRYEIVSDEEKQETVVIGLSGHIVGI
DFPKEYNNWQKVEAKTLIDADIITTPINRKIVTALRSLGKEANRVTIATDYDREGELIGV
EALNIIKQVNPNVPFDRVRYSAITPKAIEAAFSNATDVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELQNAEEETFS
AQHSTRRFLDKKEATKVFKKLGKQAKLKEIEKGKKTDQPPTPFNTTGFISAANSIGLSPA
NAMRIAEALYTNGYISYPRTDNTVYPDTLDLRAQIEIFKEGSFKEYAESLLEKAELIPTR
GKKETTDHPPIFPASLAKESDLKEEEWKVYELVVRRFFATFAGPSEWETMRLKLDINGEE
FRANGARLVEHGWRWYYPYNAPEDRLFPELHEGDSLKVTNKEMPDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKL
LEENMDRIAEGKIKESTVLEESREILKQVFSELDKNREKIVESLQAGLREDKIIGICSGC
GNELIIRRSKRGGRFIGCNNYPNCTFSLPLPRSGQIIVTDKVCETHGLHHIRIINAGKRP
WDLGCPQCNFIEWQKTQQEEQAQLPKKERPKSITDLEGVGKATAGKLEEAGITSVEALAE
ADPVELAKIIKTSVKKVKSWQVSCNGTVEGNSTVKDNCTAEDA

NT seq 2292 nt +upstreamnt +downstreamnt
atgcaccttattgtaacggaaaaaaatatagcagcaaggaggatagctgcaattctggct
ccaaaaaacccgaagaaggatagagtcagtggagtagacgtataccggtatgaaattgtg
tccgatgaagagaagcaggagactgtagttatagggctgtcgggccatatcgtagggatc
gattttcccaaagaatacaacaactggcagaaagtggaggctaaaacccttatcgacgcc
gatataataacaactcctatcaaccggaagattgtaactgcccttagaagcctgggaaag
gaagcaaacagggttacaattgctactgactacgatcgggaaggagaactgataggagtc
gaggctctcaatattataaaacaggtgaatccaaatgttccttttgaccgggtgcgctac
agtgcaataaccccaaaagcaatagaagccgcattttcaaacgcgacagatgttgatttt
aatcttgcggatgcaggtcactccaggcaggtcattgacctggtctggggtgcagccctt
acccgttatatttctcttgccgcaggcaggcttggaaagatgtttctttctgtgggcagg
gtacagtcgccaactctttctcttattgttgacagggaaaaagagaggaatatttttgtc
cctactccttattgggagatccatgtagaactccaaaatgcagaagaagaaaccttctcg
gctcaacattcaactcgccgtttcctggataaaaaggaggcaacaaaagtcttcaagaaa
ctggggaaacaggccaaattaaaagaaattgaaaaagggaaaaagactgaccagcccccg
actcctttcaataccacaggtttcataagcgcagcaaactcaatcgggctcagtcctgca
aatgcgatgcgcatagctgaagccctctataccaatggttatatttcgtaccccagaacc
gacaatacggtttatcccgacactcttgacctgagggcgcagattgagattttcaaagaa
ggttcctttaaagaatatgcagagtcccttcttgagaaagccgaactcattcctacgcga
ggaaaaaaggagactaccgaccatccgcctatttttccggcttcccttgcaaaagagtcc
gacttaaaagaggaagagtggaaggtttatgaacttgtagtcaggcgcttttttgcaact
tttgccgggccaagcgagtgggaaactatgcgcttgaaactcgacatcaacggagaagag
ttcagggcaaacggggcaaggcttgtagaacatggctggagatggtactatccttacaat
gcgcctgaagacagactgttccctgaacttcatgaaggcgattccctgaaggttacaaac
aaagagatgccggataaagaaacccagcctccaggccgttacggacagggaagacttatt
aatattatggaagagctcgggcttggaacaaaggcgacacggcatgagataatcagcaag
ctgtactccagggcttacatccacggaaatcctgtgcagcctacgaatacttcttttgca
gtaatggatactcttgagaagtactcccctactattacaaaaccggacatgacaaagctg
cttgaagaaaacatggacaggattgctgagggcaagatcaaagagtctactgttcttgaa
gagtcgcgggagatattaaagcaggtcttctcggaacttgataaaaaccgggaaaaaatc
gtagaatctcttcaggcaggcctcagggaagataaaatcataggcatctgctcaggctgc
ggaaacgagcttataattcggcgctcgaaaagaggaggccgttttattggctgcaacaat
tatccgaactgtaccttttcccttcctctgcccagaagcggacagatcatagttactgac
aaggtctgtgagactcacggcctgcaccatatccgtataatcaatgcaggaaaacggccc
tgggaccttggctgccctcagtgcaatttcattgaatggcagaaaacccagcaggaagaa
caggctcagctgcccaaaaaagaaaggccaaaatcgattacggacctcgaaggcgttgga
aaagccacagcaggaaaactggaagaagccggaattacaagcgtggaagccctggcagaa
gccgaccccgtagagctcgcgaaaataataaagaccagcgtgaagaaggtcaaaagctgg
caggtttcgtgcaacggtacggttgaaggcaacagcacggtcaaggacaactgtacagct
gaggacgcatga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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